myRT

myRT report for GCA_002186805.1_ASM218680v1

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Seq: NFVZ01000062.1 Klebsiella pneumoniae strain PO1805 PO1805_NODE_65.ctg_1, whole genome shotgun sequence (1915 bp)
Overview 1 RT 1: 61-1915 bp Neighborhood of RT #1 [61, 1915] RVT-GII Feature: gene Location: 61-1545 bp Ori: OVU63002.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1 1 53 bp Feature: gene Location: 1678-1915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NFVZ01000011.1 Klebsiella pneumoniae strain PO1805 PO1805_NODE_19.ctg_1, whole genome shotgun sequence (97031 bp)
Overview 1 RT 1: 27302-32614 bp Neighborhood of RT #1 [27302, 32778] PRK09692 RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 27302-28548 bp Feature: domain Description: PRK09692 Location: 27311-28205 bp Feature: domain Description: PRK09692 Location: 2 7311-2 82 05 bp Feature: gene Location: 28595-29191 bp Feature: gene Location: 29617-30582 bp Ori: OVU70990.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29725-30322 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 972 5-3032 2 bp Feature: gene Location: 30560-32152 bp Ori: OVU70991.1 Feature: domain Description: COG3950 Location: 30740-31961 bp Feature: domain Description: COG3950 Location: 30740-31961 bp Feature: gene Location: 32137-32778 bp Ori: OVU70992.1 Feature: domain Description: TIGR02646 Location: 32239-32614 bp Feature: domain Description: TIGR02 646 Location: 32 2 39-32 614 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: NFVZ01000023.1 Klebsiella pneumoniae strain PO1805 PO1805_NODE_3.ctg_1, whole genome shotgun sequence (377362 bp)
Overview 1 RT 1: 335454-339472 bp Neighborhood of RT #1 [335454, 339622] PRK09692 PRK09692 SLATT_5 RVT-UG17 Psu Feature: gene Location: 335454-336427 bp Feature: domain Description: PRK09692 Location: 335463-335826 bp Feature: domain Description: PRK09692 Location: 3 3 5463 -3 3 5826 bp Feature: domain Description: PRK09692 Location: 335847-336219 bp Feature: domain Description: PRK09692 Location: 3 3 5847-3 3 6219 bp Feature: gene Location: 336480-337121 bp Ori: OVU67647.1 Feature: domain Description: SLATT_5 Location: 336483-337086 bp Feature: domain Description: SLATT_5 Location: 3 3 6483 -3 3 7086 bp Feature: gene Location: 337316-338725 bp Ori: OVU67588.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 337553-338165 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3 3 7553 -3 3 8165 bp Feature: gene Location: 338907-339042 bp Feature: gene Location: 339052-339622 bp Feature: domain Description: Psu Location: 339091-339472 bp Feature: domain Description: Psu Location: 3 3 9091-3 3 9472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), SLATT_5 (pfam18160), RVT-UG17, Psu (pfam07455)

Seq: NFVZ01000021.1 Klebsiella pneumoniae strain PO1805 PO1805_NODE_28.ctg_1, whole genome shotgun sequence (32699 bp)
Overview 1 RT 1: 19545-27247 bp Neighborhood of RT #1 [19545, 27258] XRE RVT-UG1 COG3440 COG3183 Feature: gene Location: 19545-20342 bp Ori: OVU68065.1 Feature: domain Description: XRE Location: 19548-19731 bp Feature: domain Description: XRE Location: 1954 8-19731 bp Feature: gene Location: 20641-21075 bp Feature: gene Location: 21084-24782 bp Ori: OVU68067.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 21696-22206 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 21696-22206 bp Feature: gene Location: 25571-26440 bp Ori: OVU68068.1 Feature: domain Description: COG3440 Location: 25583-26432 bp Feature: domain Description: COG34 4 0 Location: 25583-264 32 bp Feature: gene Location: 26620-27258 bp Ori: OVU68069.1 Feature: domain Description: COG3183 Location: 26938-27247 bp Feature: domain Description: COG3183 Location: 26938-2724 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XRE (COG1476), RVT-UG1, COG3440 (Predicted restriction endonuclease ), COG3183 (Predicted restriction endonuclease, HNH family )