myRT

myRT report for GCA_002187575.1_ASM218757v1

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Seq: NFYA01000056.1 Klebsiella pneumoniae strain CAB1442 CAB1442_NODE_49.ctg_1, whole genome shotgun sequence (12312 bp)
Overview 1 RT 1: 4119-7142 bp Neighborhood of RT #1 [4119, 7142] PHA02517 RVT-GII GIIM Feature: gene Location: 4119-4304 bp Feature: gene Location: 4370-4852 bp Feature: domain Description: PHA02517 Location: 4388-4826 bp Feature: domain Description: PHA0251 7 Location: 4388-4826 bp Feature: gene Location: 4921-6429 bp Ori: OVX45099.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5179-5911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 79-591 1 bp Feature: domain Description: GIIM Note: maturase Location: 5986-6184 bp Feature: domain Description: GIIM Note: maturase Location: 5986-61 84 bp Feature: gene Location: 6515-6823 bp Feature: gene Location: 6738-7142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NFYA01000057.1 Klebsiella pneumoniae strain CAB1442 CAB1442_NODE_5.ctg_1, whole genome shotgun sequence (295377 bp)
Overview 1 RT 1: 137957-140988 bp Neighborhood of RT #1 [137957, 140990] RVT-Retrons HTH_XRE DinI Feature: gene Location: 137957-138151 bp Feature: gene Location: 138150-138581 bp Feature: gene Location: 138720-139670 bp Ori: OVX44526.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 138900-139443 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 138900-139443 bp Feature: gene Location: 139648-139956 bp Ori: OVX44527.1 Feature: domain Description: HTH_XRE Location: 139660-139825 bp Feature: domain Description: HTH_XRE Location: 139660-13982 5 bp Feature: gene Location: 140577-140990 bp Ori: OVX44688.1 Feature: domain Description: DinI Location: 140805-140988 bp Feature: domain Description: DinI Location: 140805-140988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DinI (pfam06183)

Seq: NFYA01000045.1 Klebsiella pneumoniae strain CAB1442 CAB1442_NODE_39.ctg_1, whole genome shotgun sequence (27231 bp)
Overview 1 RT 1: 11737-14516 bp Neighborhood of RT #1 [11737, 14516] PRK10276 RVT-GII Feature: gene Location: 11737-12162 bp Ori: OVX46616.1 Feature: domain Description: PRK10276 Location: 11740-12148 bp Feature: domain Description: PRK10276 Location: 11740-12148 bp Feature: gene Location: 12317-12568 bp Feature: gene Location: 12568-14052 bp Ori: OVX46618.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12970-13660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12970-13 660 bp Feature: gene Location: 14070-14261 bp Feature: gene Location: 14286-14516 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: NFYA01000079.1 Klebsiella pneumoniae strain CAB1442 CAB1442_NODE_7.ctg_1, whole genome shotgun sequence (217200 bp)
Overview 1 RT 1: 203954-208837 bp Neighborhood of RT #1 [203954, 208839] PRK15110 PRK09951 RVT-UG11 umuC Feature: gene Location: 203954-204919 bp Ori: OVX42860.1 Feature: domain Description: PRK15110 Location: 203957-204917 bp Feature: domain Description: PRK15110 Location: 203957-204 917 bp Feature: gene Location: 205124-205792 bp Ori: OVX42861.1 Feature: domain Description: PRK09951 Location: 205127-205790 bp Feature: domain Description: PRK09951 Location: 205127-205790 bp Feature: gene Location: 205993-206622 bp Ori: OVX42885.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 205996-206443 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 205996-2064 4 3 bp Feature: gene Location: 207161-207418 bp Feature: gene Location: 207574-208839 bp Ori: OVX42863.1 Feature: domain Description: umuC Location: 207577-208837 bp Feature: domain Description: umuC Location: 207577-208837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15110 (peptide ABC transporter permease SapB), PRK09951 (hypothetical protein; Provisional), RVT-UG11, umuC (PRK03609)