myRT

myRT report for GCA_002188075.1_ASM218807v1

Download annotations/find similar RTs

Seq: NFXQ01000025.1 Klebsiella pneumoniae strain G186 G186_NODE_20.ctg_1, whole genome shotgun sequence (91773 bp)
Overview 1 RT 1: 72032-79165 bp Neighborhood of RT #1 [72032, 79167] conj_conj_conj_TIGR03755 TraG_N RVT-UG5 COG3440 GlgS Feature: gene Location: 72032-73393 bp Ori: OVW96319.1 Feature: domain Description: conj_conj_conj_TIGR03755 Location: 72122-73370 bp Feature: domain Description: conj_conj_conj_TIGR03755 Location: 721 22-73370 bp Feature: gene Location: 73390-74877 bp Ori: OVW96320.1 Feature: domain Description: TraG_N Location: 73414-74824 bp Feature: domain Description: TraG_N Location: 7341 4-74824 bp Feature: gene Location: 74942-77884 bp Ori: OVW96321.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 75443-75902 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 75443-75902 bp Feature: gene Location: 78056-78928 bp Ori: OVW96322.1 Feature: domain Description: COG3440 Location: 78074-78920 bp Feature: domain Description: COG3440 Location: 78074-78920 bp Feature: gene Location: 78967-79167 bp Ori: OVW96333.1 Feature: domain Description: GlgS Location: 78970-79165 bp Feature: domain Description: GlgS Location: 78970-791 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_conj_conj_TIGR03755, TraG_N (pfam07916), RVT-UG5, COG3440 (Predicted restriction endonuclease ), GlgS (pfam08971)

Seq: NFXQ01000068.1 Klebsiella pneumoniae strain G186 G186_NODE_6.ctg_1, whole genome shotgun sequence (272481 bp)
Overview 1 RT 1: 31681-38666 bp Neighborhood of RT #1 [31681, 38683] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 31681-32523 bp Feature: domain Description: INT_P4_C Location: 31882-32461 bp Feature: domain Description: INT_P4_C Location: 31882 -32 461 bp Feature: gene Location: 32750-33203 bp Feature: domain Description: Integrase_1 Location: 32768-33032 bp Feature: domain Description: Integrase_1 Location: 32 768-33032 bp Feature: gene Location: 33200-35281 bp Ori: OVW89839.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33611-34055 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33611-34055 bp Feature: gene Location: 35278-37872 bp Ori: OVW89840.1 Feature: domain Description: FimD Location: 35320-37861 bp Feature: domain Description: FimD Location: 3532 0-37861 bp Feature: gene Location: 37919-38683 bp Ori: OVW89841.1 Feature: domain Description: FimC Location: 37964-38666 bp Feature: domain Description: FimC Location: 37964-38666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: NFXQ01000107.1 Klebsiella pneumoniae strain G186 G186_NODE_95.ctg_1, whole genome shotgun sequence (754 bp)
Overview 1 RT 1: 62-362 bp Neighborhood of RT #1 [62, 754] RVT-GII Feature: gene Location: 62-754 bp Ori: OVW85278.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65-362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65-3 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NFXQ01000032.1 Klebsiella pneumoniae strain G186 G186_NODE_27.ctg_1, whole genome shotgun sequence (56380 bp)
Overview 1 RT 1: 51413-54436 bp Neighborhood of RT #1 [51413, 54436] RVT-GII GIIM PHA02517 Feature: gene Location: 51413-51817 bp Feature: gene Location: 51732-52040 bp Feature: gene Location: 52126-53634 bp Ori: OVW94980.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52384-53116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52384 -53116 bp Feature: domain Description: GIIM Note: maturase Location: 53191-53389 bp Feature: domain Description: GIIM Note: maturase Location: 53191-53389 bp Feature: gene Location: 53703-54185 bp Feature: domain Description: PHA02517 Location: 53721-54159 bp Feature: domain Description: PHA02517 Location: 53721-54 159 bp Feature: gene Location: 54251-54436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: NFXQ01000096.1 Klebsiella pneumoniae strain G186 G186_NODE_85.ctg_1, whole genome shotgun sequence (989 bp)
Overview 1 RT 1: 122-988 bp Neighborhood of RT #1 [122, 989] RVT-GII Feature: gene Location: 122-373 bp Feature: gene Location: 373-989 bp Ori: OVW86472.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775 -988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII