myRT

myRT report for GCA_002188135.1_ASM218813v1

Download annotations/find similar RTs

Seq: NFXY01000071.1 Klebsiella pneumoniae strain CAB1505 CAB1505_NODE_32.ctg_1, whole genome shotgun sequence (42815 bp)
Overview 1 RT 1: 28533-32196 bp Neighborhood of RT #1 [28533, 32196] HTH_Tnp_1 PHA02517 RVT-GII GIIM Feature: gene Location: 28533-29365 bp Feature: domain Description: HTH_Tnp_1 Location: 28539-28743 bp Feature: domain Description: HTH_Tnp_1 Location: 28539-28743 bp Feature: gene Location: 29391-29861 bp Feature: domain Description: PHA02517 Location: 29394-29856 bp Feature: domain Description: PHA0251 7 Location: 29394-29856 bp Feature: gene Location: 29942-31450 bp Ori: OVX35002.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30200-30932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30200-30932 bp Feature: domain Description: GIIM Note: maturase Location: 31007-31205 bp Feature: domain Description: GIIM Note: maturase Location: 31 007-31 205 bp Feature: gene Location: 31536-31844 bp Feature: gene Location: 31759-32196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NFXY01000056.1 Klebsiella pneumoniae strain CAB1505 CAB1505_NODE_19.ctg_1, whole genome shotgun sequence (128762 bp)
Overview 1 RT 1: 89883-97243 bp Neighborhood of RT #1 [89883, 97293] FimC FimD RVT-UG4 Integrase_1 PRK09692 Feature: gene Location: 89883-90647 bp Ori: OVX39160.1 Feature: domain Description: FimC Location: 89928-90630 bp Feature: domain Description: FimC Location: 8992 8-90630 bp Feature: gene Location: 90694-93288 bp Ori: OVX39161.1 Feature: domain Description: FimD Location: 90736-93277 bp Feature: domain Description: FimD Location: 90736-932 77 bp Feature: gene Location: 93285-95366 bp Ori: OVX39162.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 93696-94140 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 93696-94140 bp Feature: gene Location: 95408-95863 bp Ori: OVX39163.1 Feature: domain Description: Integrase_1 Location: 95411-95645 bp Feature: domain Description: Integrase_1 Location: 95411-95645 bp Feature: gene Location: 96043-97293 bp Feature: domain Description: PRK09692 Location: 96046-97243 bp Feature: domain Description: PRK09692 Location: 96046-972 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), PRK09692 (Integrase; provisional)

Seq: NFXY01000099.1 Klebsiella pneumoniae strain CAB1505 CAB1505_NODE_58.ctg_1, whole genome shotgun sequence (4962 bp)
Overview 1 RT 1: 635-4962 bp Neighborhood of RT #1 [635, 4962] ArdC RVT-GII Feature: gene Location: 635-1066 bp Feature: gene Location: 1546-2511 bp Ori: OVX31439.1 Feature: domain Description: ArdC Location: 1672-2506 bp Feature: domain Description: ArdC Location: 1672-2506 bp Feature: gene Location: 2981-4465 bp Ori: OVX31440.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3383-4073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 83 -4073 bp Feature: gene Location: 4465-4716 bp Feature: gene Location: 4874-4962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII