myRT

myRT report for GCA_002188315.1_ASM218831v1

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Seq: MWUH01000088.1 Escherichia coli strain HSP38 N_51_l_28670, whole genome shotgun sequence (28670 bp)
Overview 1 RT 1: 24170-28670 bp Neighborhood of RT #1 [24170, 28670] PRK09678 RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 24170-24442 bp Ori: OVY44194.1 Feature: domain Description: PRK09678 Location: 24179-24335 bp Feature: domain Description: PRK09678 Location: 241 79-24335 bp Feature: gene Location: 25087-26055 bp Feature: gene Location: 26057-26989 bp Ori: OVY44196.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26159-26753 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 261 59-26753 bp Feature: gene Location: 27444-28357 bp Feature: domain Description: Arm-DNA-bind_3 Location: 27453-27705 bp Feature: domain Description: Arm-DNA-bind_3 Location: 27453-27705 bp Feature: gene Location: 28473-28670 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356)

Seq: MWUH01000004.1 Escherichia coli strain HSP38 N_138_l_2524, whole genome shotgun sequence (2524 bp)
Overview 1 RT 1: 119-2062 bp Neighborhood of RT #1 [119, 2307] RVT-GII GIIM Feature: gene Location: 119-490 bp Feature: gene Location: 405-830 bp Feature: gene Location: 784-2307 bp Ori: OVY48172.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2062 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2 062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MWUH01000006.1 Escherichia coli strain HSP38 N_10_l_109886, whole genome shotgun sequence (109886 bp)
Overview 1 RT 1: 7725-12008 bp Neighborhood of RT #1 [7725, 12016] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 7725-8630 bp Feature: gene Location: 8604-8891 bp Feature: gene Location: 9116-9655 bp Ori: OVY48062.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9446-9524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9446-9524 bp Feature: gene Location: 9683-10204 bp Ori: OVY48063.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9689-9971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9689-9971 bp Feature: domain Description: GIIM Note: maturase Location: 10019-10199 bp Feature: domain Description: GIIM Note: maturase Location: 10019-10199 bp Feature: gene Location: 10526-10714 bp Feature: gene Location: 10787-12016 bp Ori: OVY48065.1 Feature: domain Description: YesM Location: 11267-12008 bp Feature: domain Description: YesM Location: 11267-12008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: MWUH01000157.1 Escherichia coli strain HSP38 N_148_l_2067, whole genome shotgun sequence (2067 bp)
Overview 1 RT 1: 1-1441 bp Neighborhood of RT #1 [1, 1454] RVT-GII Intron_maturas2 Feature: gene Location: 1-1454 bp Ori: OVY43567.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268-1099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268-1099 bp Feature: domain Description: Intron_maturas2 Location: 1213-1441 bp Feature: domain Description: Intron_maturas2 Location: 1213-14 4 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)