myRT

myRT report for GCA_002188505.1_ASM218850v1

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Seq: NINP01000007.1 Pseudomonas aeruginosa strain FFUP_PS_CB5 Contig_7, whole genome shotgun sequence (206155 bp)
Overview 1 RT 1: 50114-58314 bp 2 RT 2: 74579-84876 bp Neighborhood of RT #1 [50114, 58322] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74579, 84887] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50114-51130 bp Feature: domain Description: COG3178 Location: 50117-51116 bp Feature: domain Description: COG31 78 Location: 501 1 7-51 1 1 6 bp Feature: gene Location: 52003-52215 bp Feature: gene Location: 52403-54115 bp Feature: RT Description: RVT_N Location: 52460-52703 bp Feature: RT Description: RVT_N Location: 52460-52703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52748-53384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52748-53384 bp Feature: domain Description: YkfC Location: 53594-53744 bp Feature: domain Description: YkfC Location: 53594-53744 bp Feature: domain Description: HNH Note: nucleases Location: 53921-54059 bp Feature: domain Description: HNH Note: nucleases Location: 53921 -54059 bp Feature: gene Location: 54248-57049 bp Feature: domain Description: LptD Location: 54443-57035 bp Feature: domain Description: LptD Location: 54443-57035 bp Feature: gene Location: 57030-58322 bp Feature: domain Description: PRK10770 Location: 57120-58314 bp Feature: domain Description: PRK1 0770 Location: 571 20-5831 4 bp Feature: gene Location: 74579-76432 bp Feature: domain Description: PRK05658 Location: 74591-76430 bp Feature: domain Description: PRK05658 Location: 74591 -76430 bp Feature: gene Location: 76539-80276 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76647-77304 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76647-77304 bp Feature: domain Description: PRK09776 Location: 77517-77988 bp Feature: domain Description: PRK09776 Location: 7751 7-77988 bp Feature: domain Description: PAS Location: 78048-78570 bp Feature: domain Description: PAS Location: 78048-78570 bp Feature: domain Description: PRK10060 Location: 78579-80226 bp Feature: domain Description: PRK1 0060 Location: 78579-80226 bp Feature: gene Location: 81357-83042 bp Feature: RT Description: RVT_N Location: 81414-81654 bp Feature: RT Description: RVT_N Location: 81 41 4-81 654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81702-82338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 702-82338 bp Feature: domain Description: GIIM Note: maturase Location: 82392-82623 bp Feature: domain Description: GIIM Note: maturase Location: 82392-82623 bp Feature: domain Description: HNH Note: nucleases Location: 82875-83013 bp Feature: domain Description: HNH Note: nucleases Location: 82875-8301 3 bp Feature: gene Location: 83371-83507 bp Feature: gene Location: 83766-84887 bp Feature: domain Description: COG3177 Location: 83784-84876 bp Feature: domain Description: COG31 77 Location: 83784-84876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )