myRT

myRT report for GCA_002188535.1_ASM218853v1

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Seq: NINR01000005.1 Pseudomonas aeruginosa strain FFUP_PS_144 Contig_5, whole genome shotgun sequence (185630 bp)
Overview 1 RT 1: 108816-113552 bp Neighborhood of RT #1 [108816, 114272] resist_ArsH RVT_N RVT-GII GIIM HNHc DEXHc_Snf Feature: gene Location: 108816-109538 bp Feature: domain Description: resist_ArsH Location: 108840-109494 bp Feature: domain Description: resist_ArsH Location: 1 08840-1 09494 bp Feature: gene Location: 109597-110671 bp Feature: gene Location: 110754-112457 bp Feature: RT Description: RVT_N Location: 110811-111054 bp Feature: RT Description: RVT_N Location: 1 1 081 1 -1 1 1 054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111099-111735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 099-1 1 1 735 bp Feature: domain Description: GIIM Note: maturase Location: 111789-112020 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 789-1 1 2020 bp Feature: domain Description: HNHc Note: nucleases Location: 112254-112410 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 2254-1 1 241 0 bp Feature: gene Location: 112472-112731 bp Feature: gene Location: 113075-114272 bp Feature: domain Description: DEXHc_Snf Location: 113297-113552 bp Feature: domain Description: DEXHc_Snf Location: 1 1 3297-1 1 3552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT resist_ArsH (TIGR02690), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXHc_Snf (cd17919)

Seq: NINR01000001.1 Pseudomonas aeruginosa strain FFUP_PS_144 Contig_1, whole genome shotgun sequence (283694 bp)
Overview 1 RT 1: 129331-139637 bp 2 RT 2: 155895-164077 bp Neighborhood of RT #1 [129331, 139639] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [155895, 164091] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 129331-130452 bp Feature: domain Description: COG3177 Location: 129349-130441 bp Feature: domain Description: COG3177 Location: 12 9349-130441 bp Feature: gene Location: 130711-130848 bp Feature: gene Location: 131176-132861 bp Feature: RT Description: RVT_N Location: 131233-131473 bp Feature: RT Description: RVT_N Location: 1312 33-131473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131521-132157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13152 1-132 157 bp Feature: domain Description: GIIM Note: maturase Location: 132211-132442 bp Feature: domain Description: GIIM Note: maturase Location: 132 2 11-132 442 bp Feature: domain Description: HNH Note: nucleases Location: 132694-132832 bp Feature: domain Description: HNH Note: nucleases Location: 132 694-132 832 bp Feature: gene Location: 133942-137679 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 134050-134707 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 134050-134707 bp Feature: domain Description: PRK09776 Location: 134920-135391 bp Feature: domain Description: PRK09776 Location: 13492 0-135391 bp Feature: domain Description: PAS Location: 135448-135973 bp Feature: domain Description: PAS Location: 135448-135973 bp Feature: domain Description: PRK10060 Location: 135982-137629 bp Feature: domain Description: PRK10060 Location: 135982 -13762 9 bp Feature: gene Location: 137786-139639 bp Feature: domain Description: PRK05658 Location: 137798-139637 bp Feature: domain Description: PRK05658 Location: 137798-139637 bp Feature: gene Location: 155895-157187 bp Feature: domain Description: PRK10770 Location: 155985-157179 bp Feature: domain Description: PRK10770 Location: 155985-157179 bp Feature: gene Location: 157168-159957 bp Feature: domain Description: LptD Location: 157363-159943 bp Feature: domain Description: LptD Location: 157363-159943 bp Feature: gene Location: 160090-161802 bp Feature: RT Description: RVT_N Location: 160147-160390 bp Feature: RT Description: RVT_N Location: 160147-160390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160435-161071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160435-161071 bp Feature: domain Description: YkfC Location: 161278-161431 bp Feature: domain Description: YkfC Location: 1612 78-161431 bp Feature: domain Description: HNH Note: nucleases Location: 161608-161746 bp Feature: domain Description: HNH Note: nucleases Location: 161608-161746 bp Feature: gene Location: 161990-162202 bp Feature: gene Location: 163075-164091 bp Feature: domain Description: COG3178 Location: 163078-164077 bp Feature: domain Description: COG3178 Location: 163078-164077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )