myRT

myRT report for GCA_002188565.1_ASM218856v1

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Seq: NINS01000004.1 Pseudomonas aeruginosa strain FFUP_PS_105 Contig_4, whole genome shotgun sequence (246692 bp)
Overview 1 RT 1: 50024-58194 bp 2 RT 2: 74458-84754 bp Neighborhood of RT #1 [50024, 58202] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74458, 84765] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50024-51040 bp Ori: OVZ25453.1 Feature: domain Description: COG3178 Location: 50027-51026 bp Feature: domain Description: COG31 78 Location: 50027-51 026 bp Feature: gene Location: 51913-52125 bp Feature: gene Location: 52313-54025 bp Ori: OVZ25455.1 Gene: ltrA Feature: domain Description: RVT_N Location: 52370-52613 bp Feature: domain Description: RVT_N Location: 52370-5261 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52658-53294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52658-53294 bp Feature: domain Description: YkfC Location: 53504-53654 bp Feature: domain Description: YkfC Location: 53504-53654 bp Feature: domain Description: HNH Note: nucleases Location: 53831-53969 bp Feature: domain Description: HNH Note: nucleases Location: 53831 -53969 bp Feature: gene Location: 54158-56929 bp Ori: OVZ25456.1 Feature: domain Description: LptD Location: 54353-56915 bp Feature: domain Description: LptD Location: 54353-5691 5 bp Feature: gene Location: 56910-58202 bp Ori: OVZ25457.1 Feature: domain Description: PRK10770 Location: 57000-58194 bp Feature: domain Description: PRK1 0770 Location: 57000-581 94 bp Feature: gene Location: 74458-76311 bp Ori: OVZ25475.1 Feature: domain Description: PRK05658 Location: 74470-76309 bp Feature: domain Description: PRK05658 Location: 74470-76309 bp Feature: gene Location: 76418-80155 bp Ori: OVZ25476.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76526-77183 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76526-771 83 bp Feature: domain Description: PRK09776 Location: 77396-77867 bp Feature: domain Description: PRK09776 Location: 77396-77867 bp Feature: domain Description: PAS Location: 77924-78449 bp Feature: domain Description: PAS Location: 77924-78449 bp Feature: domain Description: PRK10060 Location: 78461-80105 bp Feature: domain Description: PRK1 0060 Location: 78461 -801 05 bp Feature: gene Location: 81236-82921 bp Ori: OVZ25477.1 Gene: ltrA Feature: domain Description: RVT_N Location: 81293-81533 bp Feature: domain Description: RVT_N Location: 81 293-81 533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81581-82217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 581 -8221 7 bp Feature: domain Description: GIIM Note: maturase Location: 82271-82502 bp Feature: domain Description: GIIM Note: maturase Location: 82271 -82502 bp Feature: domain Description: HNH Note: nucleases Location: 82754-82892 bp Feature: domain Description: HNH Note: nucleases Location: 82754-82892 bp Feature: gene Location: 83249-83385 bp Feature: gene Location: 83644-84765 bp Ori: OVZ25478.1 Feature: domain Description: COG3177 Location: 83662-84754 bp Feature: domain Description: COG31 77 Location: 83662-84754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: NINS01000015.1 Pseudomonas aeruginosa strain FFUP_PS_105 Contig_15, whole genome shotgun sequence (99224 bp)
Overview 1 RT 1: 40537-45416 bp Neighborhood of RT #1 [40537, 45424] PRK13360 COG3450 RVT_N RVT-GII YkfC HNH rpmG Feature: gene Location: 40537-41871 bp Ori: OVZ23037.1 Feature: domain Description: PRK13360 Location: 40540-41863 bp Feature: domain Description: PRK13360 Location: 40540-41863 bp Feature: gene Location: 41937-42299 bp Ori: OVZ23038.1 Feature: domain Description: COG3450 Location: 41940-42285 bp Feature: domain Description: COG3450 Location: 41940-42 2 85 bp Feature: gene Location: 42504-44210 bp Ori: OVZ23039.1 Gene: ltrA Feature: domain Description: RVT_N Location: 42561-42801 bp Feature: domain Description: RVT_N Location: 42 561-42 801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42849-43485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 849-43485 bp Feature: domain Description: YkfC Location: 43707-43860 bp Feature: domain Description: YkfC Location: 43707-43860 bp Feature: domain Description: HNH Note: nucleases Location: 44022-44160 bp Feature: domain Description: HNH Note: nucleases Location: 4402 2 -44160 bp Feature: gene Location: 44404-44781 bp Feature: gene Location: 45269-45424 bp Ori: OVZ23041.1 Gene: rpmG Feature: domain Description: rpmG Location: 45272-45416 bp Feature: domain Description: rpmG Location: 452 72 -45416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13360 (omega amino acid--pyruvate transaminase; Provisional), COG3450 (Predicted enzyme of the cupin superfamily ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), rpmG (PRK00595)

Seq: NINS01000018.1 Pseudomonas aeruginosa strain FFUP_PS_105 Contig_18, whole genome shotgun sequence (115276 bp)
Overview 1 RT 1: 109665-115276 bp Neighborhood of RT #1 [109665, 115276] CHD CHD RVT-GII GIIM Feature: gene Location: 109665-111209 bp Ori: OVZ22676.1 Feature: domain Description: CHD Location: 109881-110295 bp Feature: domain Description: CHD Location: 109881-110295 bp Feature: domain Description: CHD Location: 110523-111012 bp Feature: domain Description: CHD Location: 110523 -111012 bp Feature: gene Location: 112728-113054 bp Feature: gene Location: 113204-114472 bp Ori: OVZ22677.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113417-114074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113 417-114074 bp Feature: domain Description: GIIM Note: maturase Location: 114152-114374 bp Feature: domain Description: GIIM Note: maturase Location: 114152-1143 74 bp Feature: gene Location: 114992-115276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: NINS01000041.1 Pseudomonas aeruginosa strain FFUP_PS_105 Contig_41, whole genome shotgun sequence (44556 bp)
Overview 1 RT 1: 1875-9186 bp Neighborhood of RT #1 [1875, 10241] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1875-3014 bp Ori: OVZ19102.1 Feature: domain Description: AAA_21 Location: 1947-2016 bp Feature: domain Description: AAA_21 Location: 194 7-2016 bp Feature: domain Description: AAA_21 Location: 2490-2820 bp Feature: domain Description: AAA_21 Location: 24 90-2820 bp Feature: gene Location: 3014-3571 bp Feature: gene Location: 4090-6588 bp Ori: OVZ19125.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4093-4534 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4 093-4 534 bp Feature: gene Location: 7626-8366 bp Ori: OVZ19104.1 Feature: domain Description: YeeA Location: 7641-8232 bp Feature: domain Description: YeeA Location: 764 1-8232 bp Feature: gene Location: 8370-10241 bp Ori: OVZ19105.1 Feature: domain Description: DUF262 Location: 8418-9186 bp Feature: domain Description: DUF262 Location: 84 18-9186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)