myRT

myRT report for GCA_002188615.1_ASM218861v1

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Seq: NINT01000010.1 Pseudomonas aeruginosa strain FFUP_PS_37 Contig_10, whole genome shotgun sequence (116935 bp)
Overview 1 RT 1: 23021-33326 bp Neighborhood of RT #1 [23021, 33328] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 23021-24142 bp Feature: domain Description: COG3177 Location: 23039-24131 bp Feature: domain Description: COG31 77 Location: 23039-241 31 bp Feature: gene Location: 24401-24537 bp Feature: gene Location: 24865-26550 bp Feature: RT Description: RVT_N Location: 24922-25162 bp Feature: RT Description: RVT_N Location: 24922-251 62 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25210-25846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2521 0-25846 bp Feature: domain Description: GIIM Note: maturase Location: 25900-26131 bp Feature: domain Description: GIIM Note: maturase Location: 25900-261 31 bp Feature: domain Description: HNH Note: nucleases Location: 26383-26521 bp Feature: domain Description: HNH Note: nucleases Location: 26383-26521 bp Feature: gene Location: 27631-31368 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 27739-28396 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 27739-28396 bp Feature: domain Description: PRK09776 Location: 28609-29080 bp Feature: domain Description: PRK09776 Location: 28609-29080 bp Feature: domain Description: PAS Location: 29125-29662 bp Feature: domain Description: PAS Location: 291 25-29662 bp Feature: domain Description: PRK10060 Location: 29671-31318 bp Feature: domain Description: PRK1 0060 Location: 29671 -31 31 8 bp Feature: gene Location: 31475-33328 bp Feature: domain Description: PRK05658 Location: 31487-33326 bp Feature: domain Description: PRK05658 Location: 31 487-33326 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)