myRT

myRT report for GCA_002188625.1_ASM218862v1

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Seq: NINV01000740.1 Pseudomonas aeruginosa strain HSV3483 Contig_740, whole genome shotgun sequence (2609 bp)
Overview 1 RT 1: 2-1989 bp Neighborhood of RT #1 [2, 2609] AAA_21 RVT-UG5 Feature: gene Location: 2-469 bp Ori: OVZ67222.1 Feature: domain Description: AAA_21 Location: 29-275 bp Feature: domain Description: AAA_21 Location: 29-275 bp Feature: gene Location: 469-1026 bp Feature: gene Location: 1545-2609 bp Ori: OVZ67224.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1548-1989 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 548-1 989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5

Seq: NINV01000064.1 Pseudomonas aeruginosa strain HSV3483 Contig_64, whole genome shotgun sequence (15722 bp)
Overview 1 RT 1: 4940-11750 bp Neighborhood of RT #1 [4940, 11947] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4940-5767 bp Ori: OVZ71554.1 Gene: phnC Feature: domain Description: ABC_phnC Location: 4970-5684 bp Feature: domain Description: ABC_phnC Location: 4970-5684 bp Feature: gene Location: 6110-6620 bp Feature: domain Description: DUF772 Location: 6260-6455 bp Feature: domain Description: DUF772 Location: 62 60-6455 bp Feature: gene Location: 7140-8408 bp Ori: OVZ71555.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7353-8010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7353-8010 bp Feature: domain Description: GIIM Note: maturase Location: 8088-8310 bp Feature: domain Description: GIIM Note: maturase Location: 8088-8310 bp Feature: gene Location: 8558-8884 bp Feature: gene Location: 10403-11947 bp Ori: OVZ71556.1 Feature: domain Description: CHD Location: 10619-11033 bp Feature: domain Description: CHD Location: 10619-11033 bp Feature: domain Description: CHD Location: 11261-11750 bp Feature: domain Description: CHD Location: 112 61-11750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: NINV01000036.1 Pseudomonas aeruginosa strain HSV3483 Contig_36, whole genome shotgun sequence (16735 bp)
Overview 1 RT 1: 986-11282 bp Neighborhood of RT #1 [986, 11293] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 986-2839 bp Ori: OVZ71931.1 Feature: domain Description: PRK05658 Location: 998-2837 bp Feature: domain Description: PRK05658 Location: 998-283 7 bp Feature: gene Location: 2946-6683 bp Ori: OVZ71932.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 3054-3711 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 3 054-3 711 bp Feature: domain Description: PRK09776 Location: 3924-4395 bp Feature: domain Description: PRK09776 Location: 3 924-43 95 bp Feature: domain Description: PAS Location: 4452-4977 bp Feature: domain Description: PAS Location: 4452-4977 bp Feature: domain Description: PRK10060 Location: 4989-6633 bp Feature: domain Description: PRK10060 Location: 4989-663 3 bp Feature: gene Location: 7764-9449 bp Ori: OVZ71933.1 Gene: ltrA Feature: domain Description: RVT_N Location: 7821-8061 bp Feature: domain Description: RVT_N Location: 7821-8061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8109-8745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8109-8745 bp Feature: domain Description: GIIM Note: maturase Location: 8799-9030 bp Feature: domain Description: GIIM Note: maturase Location: 8799-903 0 bp Feature: domain Description: HNH Note: nucleases Location: 9282-9420 bp Feature: domain Description: HNH Note: nucleases Location: 9282-9420 bp Feature: gene Location: 9777-9913 bp Feature: gene Location: 10172-11293 bp Ori: OVZ71934.1 Feature: domain Description: COG3177 Location: 10190-11282 bp Feature: domain Description: COG3 177 Location: 10190-11282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )

Seq: NINV01000016.1 Pseudomonas aeruginosa strain HSV3483 Contig_16, whole genome shotgun sequence (20814 bp)
Overview 1 RT 1: 4150-12314 bp Neighborhood of RT #1 [4150, 12328] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 4150-5442 bp Ori: OVZ72278.1 Feature: domain Description: PRK10770 Location: 4240-5434 bp Feature: domain Description: PRK10770 Location: 4 24 0-54 34 bp Feature: gene Location: 5423-8194 bp Ori: OVZ72279.1 Feature: domain Description: LptD Location: 5618-8180 bp Feature: domain Description: LptD Location: 5618-8180 bp Feature: gene Location: 8327-10039 bp Ori: OVZ72280.1 Gene: ltrA Feature: domain Description: RVT_N Location: 8384-8627 bp Feature: domain Description: RVT_N Location: 8384 -8627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8672-9308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8672-9308 bp Feature: domain Description: YkfC Location: 9518-9668 bp Feature: domain Description: YkfC Location: 9518-9668 bp Feature: domain Description: HNH Note: nucleases Location: 9845-9983 bp Feature: domain Description: HNH Note: nucleases Location: 984 5-9983 bp Feature: gene Location: 10227-10439 bp Feature: gene Location: 11312-12328 bp Ori: OVZ72281.1 Feature: domain Description: COG3178 Location: 11315-12314 bp Feature: domain Description: COG3178 Location: 11315-12314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: NINV01000023.1 Pseudomonas aeruginosa strain HSV3483 Contig_23, whole genome shotgun sequence (14287 bp)
Overview 1 RT 1: 891-6739 bp Neighborhood of RT #1 [891, 6846] DEXHc_Snf RVT_N RVT-GII GIIM HNHc HepA SF2_C_SNF conj_PilL Feature: gene Location: 891-1202 bp Feature: gene Location: 1340-2393 bp Feature: domain Description: DEXHc_Snf Location: 1559-1817 bp Feature: domain Description: DEXHc_Snf Location: 15 5 9-1817 bp Feature: gene Location: 2989-4707 bp Ori: OVZ72158.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3046-3283 bp Feature: domain Description: RVT_N Location: 3046-3283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3334-3985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3334-3985 bp Feature: domain Description: GIIM Note: maturase Location: 4039-4270 bp Feature: domain Description: GIIM Note: maturase Location: 4039-4270 bp Feature: domain Description: HNHc Note: nucleases Location: 4504-4660 bp Feature: domain Description: HNHc Note: nucleases Location: 45 04-4660 bp Feature: gene Location: 4775-6034 bp Ori: OVZ72149.1 Feature: domain Description: HepA Location: 4787-4928 bp Feature: domain Description: HepA Location: 4787-4928 bp Feature: domain Description: SF2_C_SNF Location: 5474-5870 bp Feature: domain Description: SF2_C_SNF Location: 5 474-5 870 bp Feature: gene Location: 6268-6846 bp Ori: OVZ72150.1 Feature: domain Description: conj_PilL Location: 6430-6739 bp Feature: domain Description: conj_PilL Location: 6430-6739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HepA (COG0553), SF2_C_SNF (cd18793), conj_PilL (TIGR03748)