myRT

myRT report for GCA_002188935.1_ASM218893v1

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Seq: NHOI01000039.1 Yersinia intermedia strain CFSAN060536 CFSAN060536_contig_40, whole genome shotgun sequence (57160 bp)
Overview 1 RT 1: 27680-32519 bp Neighborhood of RT #1 [27680, 32533] EcsC RVT_N RVT-GII GIIM DUF932 DUF3944 YaaW Feature: gene Location: 27680-28285 bp Ori: OVZ81721.1 Feature: domain Description: EcsC Location: 27767-28274 bp Feature: domain Description: EcsC Location: 27767-28274 bp Feature: gene Location: 28364-28495 bp Feature: gene Location: 28577-30277 bp Ori: OVZ81751.1 Feature: domain Description: RVT_N Location: 28631-28874 bp Feature: domain Description: RVT_N Location: 28631 -28874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28919-29555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2891 9-29555 bp Feature: domain Description: GIIM Note: maturase Location: 29606-29840 bp Feature: domain Description: GIIM Note: maturase Location: 29606-29840 bp Feature: gene Location: 30789-31562 bp Ori: OVZ81722.1 Feature: domain Description: DUF932 Location: 30858-31515 bp Feature: domain Description: DUF932 Location: 30858-31 51 5 bp Feature: gene Location: 31802-32533 bp Ori: OVZ81723.1 Feature: domain Description: DUF3944 Location: 31814-31919 bp Feature: domain Description: DUF3944 Location: 31 81 4-31 91 9 bp Feature: domain Description: YaaW Location: 31922-32519 bp Feature: domain Description: YaaW Location: 31 922-3251 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EcsC (pfam12787), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF932 (pfam06067), DUF3944 (pfam13099), YaaW (COG4735)

Seq: NHOI01000019.1 Yersinia intermedia strain CFSAN060536 CFSAN060536_contig_19, whole genome shotgun sequence (80625 bp)
Overview 1 RT 1: 10237-15589 bp Neighborhood of RT #1 [10237, 15621] RVT-UG4 PRK09692 Feature: gene Location: 10237-11127 bp Feature: gene Location: 11358-12533 bp Feature: gene Location: 12565-13427 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 12739-12907 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 12 739-12 907 bp Feature: gene Location: 14003-14299 bp Feature: gene Location: 14425-15621 bp Ori: OVZ85489.1 Feature: domain Description: PRK09692 Location: 14431-15589 bp Feature: domain Description: PRK09692 Location: 14431-15589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PRK09692 (Integrase; provisional)