myRT

myRT report for GCA_002189065.1_ASM218906v1

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Seq: BDMN01000478.1 Bathymodiolus platifrons methanotrophic gill symbiont DNA, contig: bplSymb_SCF17201, strain: HPD1508-B01-01, whole genome shotgun sequence (2740 bp)
Overview 1 RT 1: 141-1449 bp Neighborhood of RT #1 [141, 2066] RVT-CRISPR-like RT_nLTR_like Feature: gene Location: 141-1151 bp Ori: GAW87784.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 729-1143 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 729-1 1 43 bp Feature: gene Location: 1224-2066 bp Ori: GAW87785.1 Feature: domain Description: RT_nLTR_like Location: 1257-1449 bp Feature: domain Description: RT_nLTR_like Location: 1 257-1 449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, RT_nLTR_like (cd01650)

Seq: BDMN01000231.1 Bathymodiolus platifrons methanotrophic gill symbiont DNA, contig: bplSymb_SCF04304, strain: HPD1508-B01-01, whole genome shotgun sequence (5743 bp)
Overview 1 RT 1: 818-4325 bp Neighborhood of RT #1 [818, 4375] HipB RVT-Retrons PRK13877 Feature: gene Location: 818-1144 bp Ori: GAW86873.1 Feature: domain Description: HipB Location: 827-1067 bp Feature: domain Description: HipB Location: 82 7-1067 bp Feature: gene Location: 1104-2105 bp Ori: GAW86874.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1308-1845 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1308-1845 bp Feature: gene Location: 2763-3092 bp Feature: gene Location: 3995-4375 bp Ori: GAW86876.1 Feature: domain Description: PRK13877 Location: 4115-4325 bp Feature: domain Description: PRK13877 Location: 4115-432 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-Retrons, PRK13877 (conjugal transfer transcriptional regulator TraJ)

Seq: BDMN01000485.1 Bathymodiolus platifrons methanotrophic gill symbiont DNA, contig: bplSymb_SCF17901, strain: HPD1508-B01-01, whole genome shotgun sequence (2335 bp)
Overview 1 RT 1: 88-1992 bp Neighborhood of RT #1 [88, 2015] RVT-UG17 SLATT_5 Feature: gene Location: 88-1416 bp Ori: GAW87800.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 316-919 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3 16-919 bp Feature: gene Location: 1413-2015 bp Ori: GAW87801.1 Feature: domain Description: SLATT_5 Location: 1425-1992 bp Feature: domain Description: SLATT_5 Location: 1425-1992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160)

Seq: BDMN01000366.1 Bathymodiolus platifrons methanotrophic gill symbiont DNA, contig: bplSymb_SCF09902, strain: HPD1508-B01-01, whole genome shotgun sequence (2222 bp)
Overview 1 RT 1: 1130-1835 bp Neighborhood of RT #1 [1130, 2098] RVT-Retrons Feature: gene Location: 1130-2098 bp Ori: GAW87533.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1298-1835 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1298-1835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: BDMN01000304.1 Bathymodiolus platifrons methanotrophic gill symbiont DNA, contig: bplSymb_SCF07003, strain: HPD1508-B01-01, whole genome shotgun sequence (3798 bp)
Overview 1 RT 1: 559-2221 bp Neighborhood of RT #1 [559, 3267] RVT-Retrons Feature: gene Location: 559-1185 bp Feature: gene Location: 1462-3267 bp Ori: GAW87289.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1597-2221 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15 97-2221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons