myRT

myRT report for GCA_002189185.1_ASM218918v1

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Seq: MSYV01000079.1 Klebsiella pneumoniae strain C4-D10-13 NA-C4_S89_R1__paired__contig_79, whole genome shotgun sequence (29208 bp)
Overview 1 RT 1: 15560-18910 bp Neighborhood of RT #1 [15560, 18910] ArdC RVT-GII Feature: gene Location: 15560-16525 bp Ori: OWA56434.1 Feature: domain Description: ArdC Location: 15686-16520 bp Feature: domain Description: ArdC Location: 1 5686-1 6520 bp Feature: gene Location: 16934-17002 bp Feature: gene Location: 16995-18479 bp Ori: OWA56435.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17397-18087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7397-1 8087 bp Feature: gene Location: 18479-18730 bp Feature: gene Location: 18795-18910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII

Seq: MSYV01000030.1 Klebsiella pneumoniae strain C4-D10-13 NA-C4_S89_R1__paired__contig_30, whole genome shotgun sequence (123599 bp)
Overview 1 RT 1: 84777-92125 bp Neighborhood of RT #1 [84777, 92175] FimC FimD RVT-UG4 Integrase_1 PRK09692 Feature: gene Location: 84777-85541 bp Ori: OWA59596.1 Feature: domain Description: FimC Location: 84822-85524 bp Feature: domain Description: FimC Location: 8482 2 -8552 4 bp Feature: gene Location: 85588-88182 bp Ori: OWA59597.1 Feature: domain Description: FimD Location: 85630-88171 bp Feature: domain Description: FimD Location: 85630-88171 bp Feature: gene Location: 88179-90260 bp Ori: OWA59598.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 88590-89034 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 88590-89034 bp Feature: gene Location: 90302-90757 bp Ori: OWA59599.1 Feature: domain Description: Integrase_1 Location: 90305-90539 bp Feature: domain Description: Integrase_1 Location: 90305-90539 bp Feature: gene Location: 90937-92175 bp Feature: domain Description: PRK09692 Location: 90943-92125 bp Feature: domain Description: PRK09692 Location: 90943-92 12 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), PRK09692 (Integrase; provisional)

Seq: MSYV01000074.1 Klebsiella pneumoniae strain C4-D10-13 NA-C4_S89_R1__paired__contig_74, whole genome shotgun sequence (12258 bp)
Overview 1 RT 1: 4304-7512 bp Neighborhood of RT #1 [4304, 7512] PRK10276 RVT-GII Feature: gene Location: 4304-4729 bp Ori: OWA56493.1 Feature: domain Description: PRK10276 Location: 4307-4715 bp Feature: domain Description: PRK10276 Location: 43 07-4715 bp Feature: gene Location: 4883-5134 bp Feature: gene Location: 5134-6666 bp Ori: OWA56495.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5536-6274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 553 6-6274 bp Feature: gene Location: 6900-7130 bp Feature: gene Location: 7300-7512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: MSYV01000053.1 Klebsiella pneumoniae strain C4-D10-13 NA-C4_S89_R1__paired__contig_53, whole genome shotgun sequence (3005 bp)
Overview 1 RT 1: 1-2873 bp Neighborhood of RT #1 [1, 2873] RVT-GII GIIM PHA02517 Feature: gene Location: 1-85 bp Feature: gene Location: 298-723 bp Feature: gene Location: 692-2200 bp Ori: OWA56994.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950-1682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950-1682 bp Feature: domain Description: GIIM Note: maturase Location: 1757-1955 bp Feature: domain Description: GIIM Note: maturase Location: 1757-1955 bp Feature: gene Location: 2275-2523 bp Ori: OWA56995.1 Feature: domain Description: PHA02517 Location: 2284-2488 bp Feature: domain Description: PHA02517 Location: 2284 -24 88 bp Feature: gene Location: 2742-2873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)