myRT

myRT report for GCA_002189305.1_ASM218930v1

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Seq: MSZD01000067.1 Klebsiella pneumoniae strain C12-E8-15 NA-C12_S130_R1__paired__contig_67, whole genome shotgun sequence (4985 bp)
Overview 1 RT 1: 1717-4887 bp Neighborhood of RT #1 [1717, 4887] ArdC RVT-GII Feature: gene Location: 1717-2682 bp Ori: OWB03378.1 Feature: domain Description: ArdC Location: 1843-2677 bp Feature: domain Description: ArdC Location: 1 843-2677 bp Feature: gene Location: 3091-3159 bp Feature: gene Location: 3152-4636 bp Ori: OWB03379.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3554-4244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3554-4244 bp Feature: gene Location: 4636-4887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII

Seq: MSZD01000154.1 Klebsiella pneumoniae strain C12-E8-15 NA-C12_S130_R1__paired__contig_159, whole genome shotgun sequence (693 bp)
Overview 1 RT 1: 1-693 bp Neighborhood of RT #1 [1, 693] RVT-Retrons Feature: gene Location: 1-298 bp Ori: OWA99081.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 181-298 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 181-2 98 bp Feature: gene Location: 413-693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: MSZD01000061.1 Klebsiella pneumoniae strain C12-E8-15 NA-C12_S130_R1__paired__contig_61, whole genome shotgun sequence (22152 bp)
Overview 1 RT 1: 13430-16235 bp Neighborhood of RT #1 [13430, 16235] PHA02517 RVT-GII GIIM Feature: gene Location: 13430-13630 bp Feature: gene Location: 13727-13975 bp Ori: OWB04303.1 Feature: domain Description: PHA02517 Location: 13736-13940 bp Feature: domain Description: PHA02517 Location: 13 73 6-13 940 bp Feature: gene Location: 14050-15558 bp Ori: OWB04311.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14308-15040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143 08-15040 bp Feature: domain Description: GIIM Note: maturase Location: 15115-15313 bp Feature: domain Description: GIIM Note: maturase Location: 15115-153 13 bp Feature: gene Location: 15527-15952 bp Feature: gene Location: 15867-16235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: MSZD01000062.1 Klebsiella pneumoniae strain C12-E8-15 NA-C12_S130_R1__paired__contig_62, whole genome shotgun sequence (41963 bp)
Overview 1 RT 1: 12189-16454 bp Neighborhood of RT #1 [12189, 16459] D PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 12189-13289 bp Ori: OWB04261.1 Feature: domain Description: D Location: 12204-13275 bp Feature: domain Description: D Location: 12204 -13275 bp Feature: gene Location: 13383-13598 bp Ori: OWB04292.1 Feature: domain Description: PRK09678 Location: 13389-13581 bp Feature: domain Description: PRK09678 Location: 13389-13581 bp Feature: gene Location: 14002-14775 bp Ori: OWB04262.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 14137-14590 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 14 137-14 590 bp Feature: gene Location: 15390-15872 bp Ori: OWB04263.1 Feature: domain Description: SmpB Location: 15420-15864 bp Feature: domain Description: SmpB Location: 154 20-15864 bp Feature: gene Location: 15983-16459 bp Ori: OWB04264.1 Feature: domain Description: PRK10724 Location: 15989-16454 bp Feature: domain Description: PRK10724 Location: 15989-164 54 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)