myRT

myRT report for GCA_002190095.1_ASM219009v1

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Seq: LYDJ01002312.1 Escherichia coli strain ECOR72 ECOR72_contig_86_consensus, whole genome shotgun sequence (11278 bp)
Overview 1 RT 1: 182-4999 bp Neighborhood of RT #1 [182, 5091] PRK09692 SLATT_5 RVT-UG17 Psu PRK09678 PRK09678 Feature: gene Location: 182-1360 bp Ori: OWF20194.1 Feature: domain Description: PRK09692 Location: 191-1343 bp Feature: domain Description: PRK09692 Location: 1 91 -1 343 bp Feature: gene Location: 1377-2018 bp Ori: OWF20205.1 Feature: domain Description: SLATT_5 Location: 1380-1986 bp Feature: domain Description: SLATT_5 Location: 1 380-1 986 bp Feature: gene Location: 2213-3622 bp Ori: OWF20195.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2450-3062 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 2450-3062 bp Feature: gene Location: 3945-4517 bp Ori: OWF20196.1 Feature: domain Description: Psu Location: 3963-4500 bp Feature: domain Description: Psu Location: 3963-4500 bp Feature: gene Location: 4591-5091 bp Ori: OWF20197.1 Feature: domain Description: PRK09678 Location: 4594-4726 bp Feature: domain Description: PRK09678 Location: 4594-4726 bp Feature: domain Description: PRK09678 Location: 4849-4999 bp Feature: domain Description: PRK09678 Location: 4849-4999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), SLATT_5 (pfam18160), RVT-UG17, Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: LYDJ01002450.1 Escherichia coli strain ECOR72 ECOR72_contig_994_consensus, whole genome shotgun sequence (2791 bp)
Overview 1 RT 1: 677-2791 bp Neighborhood of RT #1 [677, 2791] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 677-2326 bp Ori: OWF19069.1 Feature: domain Description: RVT_N Location: 707-944 bp Feature: domain Description: RVT_N Location: 707-944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 995-1637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 995-1637 bp Feature: domain Description: GIIM Note: maturase Location: 1688-1922 bp Feature: domain Description: GIIM Note: maturase Location: 1688-192 2 bp Feature: domain Description: HNHc Note: nucleases Location: 2132-2291 bp Feature: domain Description: HNHc Note: nucleases Location: 2 132 -2 2 91 bp Feature: gene Location: 2583-2791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LYDJ01000334.1 Escherichia coli strain ECOR72 ECOR72_contig_1300_consensus, whole genome shotgun sequence (17718 bp)
Overview 1 RT 1: 1-4190 bp Neighborhood of RT #1 [1, 4190] Inovirus_Gp2 RVT-GII Feature: gene Location: 1-185 bp Feature: gene Location: 1044-1607 bp Ori: OWF29038.1 Feature: domain Description: Inovirus_Gp2 Location: 1101-1542 bp Feature: domain Description: Inovirus_Gp2 Location: 1101-1542 bp Feature: gene Location: 1933-3096 bp Ori: OWF29039.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2047-2734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2047-273 4 bp Feature: gene Location: 3083-3319 bp Feature: gene Location: 3957-4190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Inovirus_Gp2 (pfam11726), RVT-GII

Seq: LYDJ01002295.1 Escherichia coli strain ECOR72 ECOR72_contig_854_consensus, whole genome shotgun sequence (12993 bp)
Overview 1 RT 1: 10544-12476 bp Neighborhood of RT #1 [10544, 12868] PRK10276 RVT-GII Feature: gene Location: 10544-10975 bp Ori: OWF20478.1 Feature: domain Description: PRK10276 Location: 10595-10958 bp Feature: domain Description: PRK10276 Location: 10595-10958 bp Feature: gene Location: 11552-11746 bp Feature: gene Location: 11858-12868 bp Ori: OWF20479.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11864-12476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11864 -124 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII