myRT

myRT report for GCA_002190595.1_ASM219059v1

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Seq: LYAM01000358.1 Escherichia coli strain ECOR24 ECOR24_contig_58_consensus, whole genome shotgun sequence (24083 bp)
Overview 1 RT 1: 4562-10953 bp Neighborhood of RT #1 [4562, 10979] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 4562-5617 bp Ori: OWC71284.1 Feature: domain Description: YesN Location: 4565-4964 bp Feature: domain Description: YesN Location: 4565-4964 bp Feature: domain Description: YesN Location: 5297-5594 bp Feature: domain Description: YesN Location: 5297-5594 bp Feature: gene Location: 5634-6863 bp Ori: OWC71303.1 Feature: domain Description: YesM Location: 6114-6855 bp Feature: domain Description: YesM Location: 61 1 4-6855 bp Feature: gene Location: 7446-7967 bp Ori: OWC71285.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7452-7734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7452-7734 bp Feature: domain Description: GIIM Note: maturase Location: 7782-7962 bp Feature: domain Description: GIIM Note: maturase Location: 7782-7962 bp Feature: gene Location: 7995-8534 bp Ori: OWC71286.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8325-8403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8325-8403 bp Feature: gene Location: 9020-9925 bp Feature: gene Location: 10062-10979 bp Ori: OWC71288.1 Feature: domain Description: PFLE_PFLC Location: 10098-10953 bp Feature: domain Description: PFLE_PFLC Location: 1 0098-1 0953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: LYAM01000177.1 Escherichia coli strain ECOR24 ECOR24_contig_25_consensus, whole genome shotgun sequence (69755 bp)
Overview 1 RT 1: 8497-15633 bp Neighborhood of RT #1 [8497, 15644] Psu RVT-UG5 nitrilase PRK09692 CAD1 Feature: gene Location: 8497-9069 bp Ori: OWC76375.1 Feature: domain Description: Psu Location: 8515-9052 bp Feature: domain Description: Psu Location: 8515-9052 bp Feature: gene Location: 9271-9960 bp Feature: gene Location: 9957-12833 bp Ori: OWC76377.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 10431-10959 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 10431-10959 bp Feature: domain Description: nitrilase Location: 12171-12753 bp Feature: domain Description: nitrilase Location: 12 171-12 753 bp Feature: gene Location: 12925-14181 bp Ori: OWC76378.1 Feature: domain Description: PRK09692 Location: 12934-14137 bp Feature: domain Description: PRK09692 Location: 12 934-14137 bp Feature: gene Location: 14625-15644 bp Ori: OWC76379.1 Feature: domain Description: CAD1 Location: 14643-15633 bp Feature: domain Description: CAD1 Location: 14643-15633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG5, nitrilase (cl11424), PRK09692 (Integrase; provisional), CAD1 (cd05283)

Seq: LYAM01000125.1 Escherichia coli strain ECOR24 ECOR24_contig_212_consensus, whole genome shotgun sequence (7406 bp)
Overview 1 RT 1: 4634-7406 bp Neighborhood of RT #1 [4634, 7406] deoxyribose_mutarotase DDE_Tnp_IS66_C RVT-GII GIIM Feature: gene Location: 4634-5170 bp Feature: domain Description: deoxyribose_mutarotase Location: 4775-5171 bp Feature: domain Description: deoxyribose_mutarotase Location: 4775-5171 bp Feature: gene Location: 5203-5394 bp Ori: OWC78918.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 5260-5371 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5260-53 71 bp Feature: gene Location: 5465-6697 bp Ori: OWC78919.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5666-6320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5666-63 20 bp Feature: domain Description: GIIM Note: maturase Location: 6398-6620 bp Feature: domain Description: GIIM Note: maturase Location: 63 98-6620 bp Feature: gene Location: 7159-7406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT deoxyribose_mutarotase (cd09269), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)

Seq: LYAM01000066.1 Escherichia coli strain ECOR24 ECOR24_contig_15_consensus, whole genome shotgun sequence (84895 bp)
Overview 1 RT 1: 51297-55179 bp Neighborhood of RT #1 [51297, 55184] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 51297-51755 bp Ori: OWC80570.1 Feature: domain Description: dut Location: 51303-51750 bp Feature: domain Description: dut Location: 51303-51750 bp Feature: gene Location: 51862-52458 bp Ori: OWC80571.1 Feature: domain Description: slmA Location: 51868-52444 bp Feature: domain Description: slmA Location: 51868-524 4 4 bp Feature: gene Location: 52504-53463 bp Ori: OWC80572.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52639-53188 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52639-53188 bp Feature: gene Location: 53761-54402 bp Ori: OWC80573.1 Feature: domain Description: pyrE Location: 53764-54397 bp Feature: domain Description: pyrE Location: 53764 -54 397 bp Feature: gene Location: 54468-55184 bp Ori: OWC80574.1 Feature: domain Description: rph Location: 54471-55179 bp Feature: domain Description: rph Location: 54 4 71-55179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)