myRT

myRT report for GCA_002190715.1_ASM219071v1

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Seq: LYAF01000057.1 Escherichia coli strain ECOR31 ECOR31_contig_151_consensus, whole genome shotgun sequence (2400 bp)
Overview 1 RT 1: 322-1979 bp Neighborhood of RT #1 [322, 2224] RVT-GII GIIM Feature: gene Location: 322-747 bp Feature: gene Location: 716-2224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 974-1706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 974-1 706 bp Feature: domain Description: GIIM Note: maturase Location: 1781-1979 bp Feature: domain Description: GIIM Note: maturase Location: 1 781 -1 979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LYAF01000149.1 Escherichia coli strain ECOR31 ECOR31_contig_85_consensus, whole genome shotgun sequence (7050 bp)
Overview 1 RT 1: 5546-7047 bp Neighborhood of RT #1 [5546, 7050] IS285 group_II_RT_mat RVT-GII HTH_Tnp_1 Feature: gene Location: 5546-6028 bp Feature: domain Description: IS285 Location: 5576-5954 bp Feature: domain Description: IS2 85 Location: 5576-5954 bp Feature: gene Location: 6167-6407 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6179-6392 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6179-6392 bp Feature: gene Location: 6376-6612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6379-6562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6379-6562 bp Feature: gene Location: 6888-7050 bp Feature: domain Description: HTH_Tnp_1 Location: 6897-7047 bp Feature: domain Description: HTH_Tnp_1 Location: 6897-7047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), group_II_RT_mat (TIGR04416), RVT-GII, HTH_Tnp_1 (pfam01527)

Seq: LYAF01000053.1 Escherichia coli strain ECOR31 ECOR31_contig_148_consensus, whole genome shotgun sequence (3467 bp)
Overview 1 RT 1: 345-3028 bp Neighborhood of RT #1 [345, 3459] RVT-GII GIIM RhsA Feature: gene Location: 345-1645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 621-1278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 621-1278 bp Feature: domain Description: GIIM Note: maturase Location: 1362-1482 bp Feature: domain Description: GIIM Note: maturase Location: 13 62-1482 bp Feature: gene Location: 2284-2682 bp Feature: gene Location: 2683-3459 bp Feature: domain Description: RhsA Location: 2689-3028 bp Feature: domain Description: RhsA Location: 2689-3 028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhsA (COG3209), RVT-GII, GIIM (pfam08388)