myRT

myRT report for GCA_002190865.1_ASM219086v1

Download annotations/find similar RTs

Seq: LXZZ01001250.1 Escherichia coli strain ECOR38 ECOR38_contig_71_consensus, whole genome shotgun sequence (47061 bp)
Overview 1 RT 1: 32170-36052 bp Neighborhood of RT #1 [32170, 36057] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 32170-32886 bp Feature: domain Description: rph Location: 32173-32881 bp Feature: domain Description: rph Location: 321 73-32881 bp Feature: gene Location: 32952-33593 bp Feature: domain Description: pyrE Location: 32955-33588 bp Feature: domain Description: pyrE Location: 32955-33588 bp Feature: gene Location: 33891-34850 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34026-34575 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34026-34575 bp Feature: gene Location: 34896-35492 bp Feature: domain Description: slmA Location: 34902-35478 bp Feature: domain Description: slmA Location: 34902-35478 bp Feature: gene Location: 35599-36057 bp Feature: domain Description: dut Location: 35605-36052 bp Feature: domain Description: dut Location: 35605-36052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: LXZZ01001206.1 Escherichia coli strain ECOR38 ECOR38_contig_67_consensus, whole genome shotgun sequence (2394 bp)
Overview 1 RT 1: 162-2350 bp Neighborhood of RT #1 [162, 2350] RVT-GII GIIM Feature: gene Location: 162-1670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 0-1152 bp Feature: domain Description: GIIM Note: maturase Location: 1227-1425 bp Feature: domain Description: GIIM Note: maturase Location: 12 2 7-142 5 bp Feature: gene Location: 1639-2064 bp Feature: gene Location: 1979-2350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)