myRT

myRT report for GCA_002191015.1_ASM219101v1

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Seq: LYCC01001344.1 Escherichia coli strain ECOR46 ECOR46_contig_220_consensus, whole genome shotgun sequence (14381 bp)
Overview 1 RT 1: 2090-6700 bp Neighborhood of RT #1 [2090, 6714] DcuC RVT-GII Asparaginase_2 DUF5339 Feature: gene Location: 2090-3451 bp Ori: OWE45932.1 Feature: domain Description: DcuC Location: 2093-3425 bp Feature: domain Description: DcuC Location: 2093-3425 bp Feature: gene Location: 3504-3689 bp Feature: gene Location: 4097-4543 bp Ori: OWE45933.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4403-4505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4403-4505 bp Feature: gene Location: 5076-6098 bp Ori: OWE45939.1 Feature: domain Description: Asparaginase_2 Location: 5157-6090 bp Feature: domain Description: Asparaginase_2 Location: 51 57-6090 bp Feature: gene Location: 6436-6714 bp Ori: OWE45934.1 Feature: domain Description: DUF5339 Location: 6499-6700 bp Feature: domain Description: DUF5339 Location: 6499-6700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112), DUF5339 (pfam17274)

Seq: LYCC01004885.1 Escherichia coli strain ECOR46 ECOR46_contig_936_consensus, whole genome shotgun sequence (2888 bp)
Overview 1 RT 1: 274-2885 bp Neighborhood of RT #1 [274, 2888] RVT-GII GIIM PHA02517 Feature: gene Location: 274-645 bp Feature: gene Location: 560-985 bp Feature: gene Location: 954-2462 bp Ori: OWD95082.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1212-1944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 12 -1944 bp Feature: domain Description: GIIM Note: maturase Location: 2019-2217 bp Feature: domain Description: GIIM Note: maturase Location: 2 019-2 2 17 bp Feature: gene Location: 2615-2888 bp Feature: domain Description: PHA02517 Location: 2618-2885 bp Feature: domain Description: PHA02 517 Location: 2 618-2 885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: LYCC01003520.1 Escherichia coli strain ECOR46 ECOR46_contig_416_consensus, whole genome shotgun sequence (35652 bp)
Overview 1 RT 1: 3727-11461 bp Neighborhood of RT #1 [3727, 11466] Phage_GPA RVT-Retrons Q Feature: gene Location: 3727-6012 bp Ori: OWE23007.1 Feature: domain Description: Phage_GPA Location: 4126-5113 bp Feature: domain Description: Phage_GPA Location: 4126-5113 bp Feature: gene Location: 6166-8004 bp Feature: gene Location: 8516-9700 bp Ori: OWE23009.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8660-9242 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8660-9242 bp Feature: gene Location: 9697-10404 bp Feature: gene Location: 10447-11466 bp Ori: OWE23011.1 Feature: domain Description: Q Location: 10450-11461 bp Feature: domain Description: Q Location: 10450-11461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-Retrons, Q (PHA02536)

Seq: LYCC01004518.1 Escherichia coli strain ECOR46 ECOR46_contig_605_consensus, whole genome shotgun sequence (15841 bp)
Overview 1 RT 1: 9428-15459 bp Neighborhood of RT #1 [9428, 15459] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Feature: gene Location: 9428-10348 bp Ori: OWE03449.1 Feature: domain Description: AbiEii Location: 9470-10211 bp Feature: domain Description: AbiEii Location: 94 70-10211 bp Feature: gene Location: 10335-11117 bp Ori: OWE03450.1 Feature: domain Description: AbiEi_3_N Location: 10347-10608 bp Feature: domain Description: AbiEi_3_N Location: 1034 7-10608 bp Feature: domain Description: AbiEi_3 Location: 10620-11076 bp Feature: domain Description: AbiEi_3 Location: 10620-11076 bp Feature: gene Location: 11433-14642 bp Ori: OWE03451.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 11961-12450 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 11961-124 50 bp Feature: domain Description: nitrilase Location: 13956-14553 bp Feature: domain Description: nitrilase Location: 13956-14 553 bp Feature: gene Location: 14989-15459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424)

Seq: LYCC01000736.1 Escherichia coli strain ECOR46 ECOR46_contig_1663_consensus, whole genome shotgun sequence (1370 bp)
Overview 1 RT 1: 83-767 bp Neighborhood of RT #1 [83, 1042] RVT-Retrons Feature: gene Location: 83-1042 bp Ori: OWE62374.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 218-767 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 218-767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons