myRT

myRT report for GCA_002191135.1_ASM219113v1

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Seq: LYYB01000158.1 Escherichia coli strain ECOR51 ECOR51_contig_1142_consensus, whole genome shotgun sequence (3959 bp)
Overview 1 RT 1: 1-3915 bp Neighborhood of RT #1 [1, 3959] AbiEi_3_N RVT-UG5 nitrilase Feature: gene Location: 1-500 bp Feature: domain Description: AbiEi_3_N Location: 34-295 bp Feature: domain Description: AbiEi_3_N Location: 34-295 bp Feature: gene Location: 795-3959 bp Ori: OWF31429.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1323-1812 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 323-1 81 2 bp Feature: domain Description: nitrilase Location: 3318-3915 bp Feature: domain Description: nitrilase Location: 331 8-391 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEi_3_N (pfam17194), RVT-UG5, nitrilase (cl11424)

Seq: LYYB01000826.1 Escherichia coli strain ECOR51 ECOR51_contig_1744_consensus, whole genome shotgun sequence (3710 bp)
Overview 1 RT 1: 509-3668 bp Neighborhood of RT #1 [509, 3709] rve DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 509-1189 bp Feature: domain Description: rve Location: 632-998 bp Feature: domain Description: rve Location: 632 -998 bp Feature: gene Location: 1265-1456 bp Ori: OWF30372.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 1322-1433 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 132 2 -1433 bp Feature: gene Location: 1527-2759 bp Ori: OWF30373.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1728-2382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172 8-2 382 bp Feature: domain Description: GIIM Note: maturase Location: 2460-2682 bp Feature: domain Description: GIIM Note: maturase Location: 2 460-2 682 bp Feature: gene Location: 3221-3709 bp Ori: OWF30374.1 Feature: domain Description: DDE_Tnp_IS66 Location: 3224-3668 bp Feature: domain Description: DDE_Tnp_IS66 Location: 32 2 4-3668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: LYYB01001035.1 Escherichia coli strain ECOR51 ECOR51_contig_1933_consensus, whole genome shotgun sequence (8192 bp)
Overview 1 RT 1: 2126-7447 bp Neighborhood of RT #1 [2126, 7470] group_II_RT_mat RVT-GII GIIM YesM YesN YesN Feature: gene Location: 2126-3031 bp Feature: gene Location: 3517-4037 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3679-3844 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3 679-3 844 bp Feature: gene Location: 4065-4586 bp Ori: OWF30072.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4071-4353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4071-43 53 bp Feature: domain Description: GIIM Note: maturase Location: 4401-4581 bp Feature: domain Description: GIIM Note: maturase Location: 4401-4581 bp Feature: gene Location: 5169-6398 bp Ori: OWF30073.1 Feature: domain Description: YesM Location: 5649-6390 bp Feature: domain Description: YesM Location: 5649-63 90 bp Feature: gene Location: 6415-7470 bp Ori: OWF30074.1 Feature: domain Description: YesN Location: 6418-6817 bp Feature: domain Description: YesN Location: 6418-6817 bp Feature: domain Description: YesN Location: 7150-7447 bp Feature: domain Description: YesN Location: 7150-7447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), YesM (COG2972), YesN (COG4753)