myRT

myRT report for GCA_002192885.1_ASM219288v1

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Seq: MWTO01000008.1 Yersinia intermedia strain SCPM-O-B-7605 NODE_8_length_160447_cov_2.06101, whole genome shotgun sequence (160447 bp)
Overview 1 RT 1: 130682-133984 bp Neighborhood of RT #1 [130682, 133995] W phage_P2_V RVT-Retrons HTH_XRE tail_comp_S Feature: gene Location: 130682-131032 bp Ori: OWF91879.1 Feature: domain Description: W Location: 130709-131015 bp Feature: domain Description: W Location: 1 30709-1 31 01 5 bp Feature: gene Location: 131029-131670 bp Ori: OWF91880.1 Feature: domain Description: phage_P2_V Location: 131065-131659 bp Feature: domain Description: phage_P2_V Location: 1 31 065-1 31 659 bp Feature: gene Location: 131771-132702 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 131948-132203 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 31 948-1 32203 bp Feature: gene Location: 132677-132993 bp Feature: domain Description: HTH_XRE Location: 132692-132794 bp Feature: domain Description: HTH_XRE Location: 1 32692-1 32794 bp Feature: gene Location: 133546-133995 bp Ori: OWF91881.1 Feature: domain Description: tail_comp_S Location: 133570-133984 bp Feature: domain Description: tail_comp_S Location: 1 33570-1 33984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT W (PHA02516), phage_P2_V (TIGR01644), RVT-Retrons, HTH_XRE (smart00530), tail_comp_S (TIGR01635)

Seq: MWTO01000087.1 Yersinia intermedia strain SCPM-O-B-7605 NODE_87_length_3728_cov_1.77145, whole genome shotgun sequence (3728 bp)
Overview 1 RT 1: 59-3390 bp Neighborhood of RT #1 [59, 3390] RVT-UG4 BACON Feature: gene Location: 59-1198 bp Feature: gene Location: 1276-1779 bp Ori: OWF85745.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1282-1534 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 12 82 -1534 bp Feature: gene Location: 1895-3061 bp Ori: OWF85746.1 Feature: domain Description: BACON Location: 2561-2723 bp Feature: domain Description: BACON Location: 2 561-2 72 3 bp Feature: gene Location: 3208-3390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, BACON (pfam13004)

Seq: MWTO01000070.1 Yersinia intermedia strain SCPM-O-B-7605 NODE_70_length_13798_cov_2.49813, whole genome shotgun sequence (13798 bp)
Overview 1 RT 1: 53-6349 bp Neighborhood of RT #1 [53, 6432] DUF2913 RVT-GII GIIM Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like xerS INT_RitC_C_like RVT-GII DUF2913 Feature: gene Location: 53-478 bp Ori: OWF86869.1 Feature: domain Description: DUF2913 Location: 62-404 bp Feature: domain Description: DUF2913 Location: 62-404 bp Feature: gene Location: 553-1386 bp Ori: OWF86870.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559-868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559-868 bp Feature: domain Description: GIIM Note: maturase Location: 982-1168 bp Feature: domain Description: GIIM Note: maturase Location: 982-1168 bp Feature: gene Location: 1813-2805 bp Ori: OWF86883.1 Feature: domain Description: Phage_int_SAM_1 Location: 1909-2134 bp Feature: domain Description: Phage_int_SAM_1 Location: 1909-213 4 bp Feature: domain Description: INT_RitA_C_like Location: 2221-2758 bp Feature: domain Description: INT_RitA_C_like Location: 2221-2758 bp Feature: gene Location: 2790-3767 bp Ori: OWF86871.1 Feature: domain Description: INT_RitB_C_like Location: 3123-3705 bp Feature: domain Description: INT_RitB_C_like Location: 3 123 -3 705 bp Feature: gene Location: 3757-4761 bp Ori: OWF86872.1 Feature: domain Description: xerS Location: 3823-4048 bp Feature: domain Description: xerS Location: 3 823 -4048 bp Feature: domain Description: INT_RitC_C_like Location: 4132-4681 bp Feature: domain Description: INT_RitC_C_like Location: 413 2-4681 bp Feature: gene Location: 4831-5538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5104-5500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5104-5500 bp Feature: gene Location: 5860-6218 bp Feature: gene Location: 6109-6432 bp Ori: OWF86873.1 Feature: domain Description: DUF2913 Location: 6184-6349 bp Feature: domain Description: DUF2913 Location: 6184-63 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2913 (pfam11140), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), xerS (PRK05084), INT_RitC_C_like (cd01182)

Seq: MWTO01000083.1 Yersinia intermedia strain SCPM-O-B-7605 NODE_83_length_5724_cov_1.73633, whole genome shotgun sequence (5724 bp)
Overview 1 RT 1: 34-3608 bp Neighborhood of RT #1 [34, 3625] Cas3''_I DEXHc_cas3 group_II_RT_mat RVT-GII YegV_kinase_like PRK02190 Feature: gene Location: 34-1053 bp Feature: domain Description: Cas3''_I Location: 88-613 bp Feature: domain Description: Cas3''_I Location: 88-613 bp Feature: domain Description: DEXHc_cas3 Location: 775-1054 bp Feature: domain Description: DEXHc_cas3 Location: 775-1054 bp Feature: gene Location: 1313-1651 bp Ori: OWF85994.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 1322-1532 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1322-1532 bp Feature: gene Location: 1662-1865 bp Ori: OWF85995.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1668-1785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1668-1785 bp Feature: gene Location: 1963-2358 bp Ori: OWF85996.1 Feature: domain Description: YegV_kinase_like Location: 1966-2350 bp Feature: domain Description: YegV_kinase_like Location: 1966-2350 bp Feature: gene Location: 2672-3625 bp Ori: OWF85997.1 Feature: domain Description: PRK02190 Location: 2729-3608 bp Feature: domain Description: PRK02190 Location: 2729-3608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas3''_I (cd10013), DEXHc_cas3 (cd17930), group_II_RT_mat (TIGR04416), RVT-GII, YegV_kinase_like (cd01944), PRK02190 (agmatinase; Provisional)