myRT

myRT report for GCA_002193475.1_ASM219347v1

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Seq: NHQI01000005.1 Escherichia coli strain 5889 5889_NODE_5_length_413599_cov_56.6018_ID_2607, whole genome shotgun sequence (413599 bp)
Overview 1 RT 1: 367693-371572 bp Neighborhood of RT #1 [367693, 371577] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 367693-368148 bp Ori: OWH15097.1 Feature: domain Description: dut Location: 367696-368143 bp Feature: domain Description: dut Location: 367696-3681 43 bp Feature: gene Location: 368255-368851 bp Ori: OWH15049.1 Feature: domain Description: slmA Location: 368261-368837 bp Feature: domain Description: slmA Location: 368261 -368837 bp Feature: gene Location: 368897-369856 bp Ori: OWH15050.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 369032-369581 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 369032-369581 bp Feature: gene Location: 370154-370795 bp Ori: OWH15051.1 Feature: domain Description: pyrE Location: 370157-370790 bp Feature: domain Description: pyrE Location: 3701 57-370790 bp Feature: gene Location: 370861-371577 bp Ori: OWH15052.1 Feature: domain Description: rph Location: 370864-371572 bp Feature: domain Description: rph Location: 370864-371 572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NHQI01000001.1 Escherichia coli strain 5889 5889_NODE_1_length_997204_cov_49.5398_ID_2599, whole genome shotgun sequence (997204 bp)
Overview 1 RT 1: 37289-43289 bp Neighborhood of RT #1 [37289, 43435] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 37289-37398 bp Feature: domain Description: SfsB Location: 37298-37364 bp Feature: domain Description: SfsB Location: 372 98-37364 bp Feature: gene Location: 37395-37865 bp Feature: gene Location: 38212-41421 bp Ori: OWH18832.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 38740-39229 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 38740-392 2 9 bp Feature: domain Description: nitrilase Location: 40735-41332 bp Feature: domain Description: nitrilase Location: 40735-41332 bp Feature: gene Location: 41716-42519 bp Ori: OWH18833.1 Feature: domain Description: AbiEi_3_N Location: 41749-42010 bp Feature: domain Description: AbiEi_3_N Location: 41749-42 010 bp Feature: domain Description: AbiEi_3 Location: 42025-42478 bp Feature: domain Description: AbiEi_3 Location: 42 02 5-42 478 bp Feature: gene Location: 42506-43435 bp Ori: OWH18834.1 Feature: domain Description: AbiEii Location: 42548-43289 bp Feature: domain Description: AbiEii Location: 42 548-432 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)