myRT

myRT report for GCA_002193515.1_ASM219351v1

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Seq: NIAZ01000004.1 Acidovorax sp. T1m scaffold4, whole genome shotgun sequence (155639 bp)
Overview 1 RT 1: 72288-76928 bp Neighborhood of RT #1 [72288, 76969] Arm-DNA-bind_3 Phage_int_SAM_3 INT_P4_C HTH_XRE RVT-Retrons Phage_AlpA RpoE Feature: gene Location: 72288-73547 bp Feature: domain Description: Arm-DNA-bind_3 Location: 72294-72558 bp Feature: domain Description: Arm-DNA-bind_3 Location: 72294-72558 bp Feature: domain Description: Phage_int_SAM_3 Location: 72585-72735 bp Feature: domain Description: Phage_int_SAM_3 Location: 72585-72735 bp Feature: domain Description: INT_P4_C Location: 72906-73464 bp Feature: domain Description: INT_P4_C Location: 72906-73464 bp Feature: gene Location: 74212-74502 bp Feature: domain Description: HTH_XRE Location: 74224-74389 bp Feature: domain Description: HTH_XRE Location: 74224-74389 bp Feature: gene Location: 74512-75444 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74665-75181 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74665-751 81 bp Feature: gene Location: 75553-76068 bp Feature: domain Description: Phage_AlpA Location: 75814-75964 bp Feature: domain Description: Phage_AlpA Location: 7581 4-75964 bp Feature: gene Location: 76367-76969 bp Feature: domain Description: RpoE Location: 76460-76928 bp Feature: domain Description: RpoE Location: 76460-76928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), Phage_int_SAM_3 (pfam14659), INT_P4_C (cd00801), HTH_XRE (smart00530), RVT-Retrons, Phage_AlpA (pfam05930), RpoE (COG3343)

Seq: NIAZ01000062.1 Acidovorax sp. T1m scaffold62, whole genome shotgun sequence (22098 bp)
Overview 1 RT 1: 19368-21902 bp Neighborhood of RT #1 [19368, 22000] atpD atpC RVT-GII Feature: gene Location: 19368-20798 bp Feature: domain Description: atpD Location: 19407-20793 bp Feature: domain Description: atpD Location: 19407-2 0793 bp Feature: gene Location: 20871-21290 bp Feature: domain Description: atpC Location: 20877-21273 bp Feature: domain Description: atpC Location: 2 0877-2 12 73 bp Feature: gene Location: 21785-22000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21803-21902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1803-2 1902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT atpD (TIGR01039), atpC (PRK14736), RVT-GII