myRT

myRT report for GCA_002193655.1_ASM219365v1

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Seq: NIOM01000060.1 Pseudomonas aeruginosa strain 2320 2320_NODE_3.ctg_1, whole genome shotgun sequence (289154 bp)
Overview 1 RT 1: 83646-93942 bp Neighborhood of RT #1 [83646, 93953] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 83646-85499 bp Ori: OWI02597.1 Feature: domain Description: PRK05658 Location: 83658-85497 bp Feature: domain Description: PRK05658 Location: 83658-85497 bp Feature: gene Location: 85606-89343 bp Ori: OWI02598.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 85714-86371 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 8571 4-86371 bp Feature: domain Description: PRK09776 Location: 86584-87055 bp Feature: domain Description: PRK09776 Location: 86584-87055 bp Feature: domain Description: PAS Location: 87100-87637 bp Feature: domain Description: PAS Location: 871 00-87637 bp Feature: domain Description: PRK10060 Location: 87646-89293 bp Feature: domain Description: PRK1 0060 Location: 87646-89293 bp Feature: gene Location: 90424-92109 bp Ori: OWI02599.1 Gene: ltrA Feature: domain Description: RVT_N Location: 90481-90721 bp Feature: domain Description: RVT_N Location: 90481 -90721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90769-91405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90769-91 405 bp Feature: domain Description: GIIM Note: maturase Location: 91459-91690 bp Feature: domain Description: GIIM Note: maturase Location: 91 459-91 690 bp Feature: domain Description: HNH Note: nucleases Location: 91942-92080 bp Feature: domain Description: HNH Note: nucleases Location: 91 942-92080 bp Feature: gene Location: 92437-92573 bp Feature: gene Location: 92832-93953 bp Ori: OWI02600.1 Feature: domain Description: COG3177 Location: 92850-93942 bp Feature: domain Description: COG31 77 Location: 92850-93942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )

Seq: NIOM01000029.1 Pseudomonas aeruginosa strain 2320 2320_NODE_19.ctg_1, whole genome shotgun sequence (124619 bp)
Overview 1 RT 1: 202-9019 bp Neighborhood of RT #1 [202, 9270] Spo0J DUF932 RVT-UG3 RVT-UG8 RadC YhcG Feature: gene Location: 202-2247 bp Ori: OWI08453.1 Feature: domain Description: Spo0J Location: 268-961 bp Feature: domain Description: Spo0J Location: 2 68-961 bp Feature: gene Location: 2327-3154 bp Ori: OWI08454.1 Feature: domain Description: DUF932 Location: 2438-3119 bp Feature: domain Description: DUF932 Location: 2 438-3119 bp Feature: gene Location: 3766-5049 bp Ori: OWI08455.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4069-4567 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4069-4567 bp Feature: gene Location: 5059-7014 bp Ori: OWI08456.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 5581-6022 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 5581-602 2 bp Feature: gene Location: 7259-7768 bp Ori: OWI08457.1 Feature: domain Description: RadC Location: 7310-7766 bp Feature: domain Description: RadC Location: 7310-7766 bp Feature: gene Location: 8104-9270 bp Ori: OWI08458.1 Feature: domain Description: YhcG Location: 8542-9019 bp Feature: domain Description: YhcG Location: 8542 -9019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spo0J (COG1475), DUF932 (pfam06067), RVT-UG3, RVT-UG8, RadC (pfam04002), YhcG (COG4804)

Seq: NIOM01000091.1 Pseudomonas aeruginosa strain 2320 2320_NODE_56.ctg_1, whole genome shotgun sequence (24636 bp)
Overview 1 RT 1: 2278-5760 bp Neighborhood of RT #1 [2278, 5789] IS5 RVT-GII InsE TnpB_IS66 Feature: gene Location: 2278-3258 bp Ori: OWH95248.1 Feature: domain Description: IS5 Location: 2467-3226 bp Feature: domain Description: IS5 Location: 2467-3 226 bp Feature: gene Location: 3475-3660 bp Feature: gene Location: 3641-4996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4355-4967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 55-4967 bp Feature: gene Location: 5152-5457 bp Ori: OWH95250.1 Feature: domain Description: InsE Location: 5158-5350 bp Feature: domain Description: InsE Location: 5158-53 50 bp Feature: gene Location: 5451-5789 bp Feature: domain Description: TnpB_IS66 Location: 5472-5760 bp Feature: domain Description: TnpB_IS66 Location: 5472-5760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, InsE (COG2963), TnpB_IS66 (pfam05717)