myRT

myRT report for GCA_002193665.1_ASM219366v1

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Seq: NIOP01000090.1 Pseudomonas aeruginosa strain 2328 2328_NODE_24.ctg_1, whole genome shotgun sequence (94845 bp)
Overview 1 RT 1: 1011-11320 bp Neighborhood of RT #1 [1011, 11322] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 1011-2132 bp Feature: domain Description: COG3177 Location: 1029-2121 bp Feature: domain Description: COG31 77 Location: 1 029-21 21 bp Feature: gene Location: 2394-2531 bp Feature: gene Location: 2859-4544 bp Feature: RT Description: RVT_N Location: 2916-3156 bp Feature: RT Description: RVT_N Location: 291 6-31 56 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3204-3840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3204-3840 bp Feature: domain Description: GIIM Note: maturase Location: 3894-4125 bp Feature: domain Description: GIIM Note: maturase Location: 3894-41 25 bp Feature: domain Description: HNH Note: nucleases Location: 4377-4515 bp Feature: domain Description: HNH Note: nucleases Location: 4377-451 5 bp Feature: gene Location: 5625-9362 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5733-6390 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5733-6390 bp Feature: domain Description: PRK09776 Location: 6603-7074 bp Feature: domain Description: PRK09776 Location: 6603-7074 bp Feature: domain Description: PAS Location: 7119-7656 bp Feature: domain Description: PAS Location: 71 1 9-7656 bp Feature: domain Description: PRK10060 Location: 7665-9312 bp Feature: domain Description: PRK1 0060 Location: 7665-931 2 bp Feature: gene Location: 9469-11322 bp Feature: domain Description: PRK05658 Location: 9481-11320 bp Feature: domain Description: PRK05658 Location: 9481 -1 1 320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)