myRT

myRT report for GCA_002193685.1_ASM219368v1

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Seq: NIOO01000070.1 Pseudomonas aeruginosa strain 2325 2325_NODE_11.ctg_1, whole genome shotgun sequence (178284 bp)
Overview 1 RT 1: 63968-72140 bp 2 RT 2: 88404-98203 bp Neighborhood of RT #1 [63968, 72148] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [88404, 98974] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH HTH_Tnp_1 Feature: gene Location: 63968-64984 bp Feature: domain Description: COG3178 Location: 63971-64970 bp Feature: domain Description: COG31 78 Location: 63971 -64970 bp Feature: gene Location: 65857-66069 bp Feature: gene Location: 66256-67968 bp Feature: RT Description: RVT_N Location: 66313-66556 bp Feature: RT Description: RVT_N Location: 6631 3-66556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66601-67234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66601 -67234 bp Feature: domain Description: YkfC Location: 67447-67597 bp Feature: domain Description: YkfC Location: 67447-67597 bp Feature: domain Description: HNH Note: nucleases Location: 67774-67912 bp Feature: domain Description: HNH Note: nucleases Location: 67774-6791 2 bp Feature: gene Location: 68101-70875 bp Feature: domain Description: LptD Location: 68296-70861 bp Feature: domain Description: LptD Location: 68296-70861 bp Feature: gene Location: 70856-72148 bp Feature: domain Description: PRK10770 Location: 70946-72140 bp Feature: domain Description: PRK1 0770 Location: 70946-721 40 bp Feature: gene Location: 88404-90257 bp Feature: domain Description: PRK05658 Location: 88416-90255 bp Feature: domain Description: PRK05658 Location: 8841 6-90255 bp Feature: gene Location: 90364-94101 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 90472-91129 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 90472-91 1 29 bp Feature: domain Description: PRK09776 Location: 91342-91813 bp Feature: domain Description: PRK09776 Location: 91 342-91 81 3 bp Feature: domain Description: PAS Location: 91885-92395 bp Feature: domain Description: PAS Location: 91 885-92395 bp Feature: domain Description: PRK10060 Location: 92404-94051 bp Feature: domain Description: PRK1 0060 Location: 92404-94051 bp Feature: gene Location: 95182-96867 bp Feature: RT Description: RVT_N Location: 95239-95479 bp Feature: RT Description: RVT_N Location: 95239-95479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95527-96163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95527-961 63 bp Feature: domain Description: GIIM Note: maturase Location: 96217-96448 bp Feature: domain Description: GIIM Note: maturase Location: 9621 7-96448 bp Feature: domain Description: HNH Note: nucleases Location: 96700-96838 bp Feature: domain Description: HNH Note: nucleases Location: 96700-96838 bp Feature: gene Location: 97169-98033 bp Feature: gene Location: 98098-98974 bp Feature: domain Description: HTH_Tnp_1 Location: 98107-98203 bp Feature: domain Description: HTH_Tnp_1 Location: 981 07-98203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), HTH_Tnp_1 (pfam01527)