myRT

myRT report for GCA_002193765.1_ASM219376v1

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Seq: NIOU01000127.1 Pseudomonas aeruginosa strain 2623 2623_NODE_7.ctg_1, whole genome shotgun sequence (260191 bp)
Overview 1 RT 1: 92240-100428 bp 2 RT 2: 116692-126989 bp Neighborhood of RT #1 [92240, 100436] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [116692, 127000] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 92240-93256 bp Feature: domain Description: COG3178 Location: 92243-93242 bp Feature: domain Description: COG31 78 Location: 92243-93242 bp Feature: gene Location: 94129-94341 bp Feature: gene Location: 94529-96241 bp Feature: RT Description: RVT_N Location: 94586-94829 bp Feature: RT Description: RVT_N Location: 94586-94829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94874-95510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94874-9551 0 bp Feature: domain Description: YkfC Location: 95717-95870 bp Feature: domain Description: YkfC Location: 9571 7-95870 bp Feature: domain Description: HNH Note: nucleases Location: 96047-96185 bp Feature: domain Description: HNH Note: nucleases Location: 96047-961 85 bp Feature: gene Location: 96374-99163 bp Feature: domain Description: LptD Location: 96569-99149 bp Feature: domain Description: LptD Location: 96569-991 49 bp Feature: gene Location: 99144-100436 bp Feature: domain Description: PRK10770 Location: 99234-100428 bp Feature: domain Description: PRK1 0770 Location: 99234-1 00428 bp Feature: gene Location: 116692-118545 bp Feature: domain Description: PRK05658 Location: 116704-118543 bp Feature: domain Description: PRK05658 Location: 1 1 6704-1 1 8543 bp Feature: gene Location: 118652-122389 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 118760-119417 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 1 8760-1 1 941 7 bp Feature: domain Description: PRK09776 Location: 119630-120101 bp Feature: domain Description: PRK09776 Location: 1 1 9630-1 201 01 bp Feature: domain Description: PAS Location: 120158-120683 bp Feature: domain Description: PAS Location: 1 201 58-1 20683 bp Feature: domain Description: PRK10060 Location: 120692-122339 bp Feature: domain Description: PRK1 0060 Location: 1 20692-1 22339 bp Feature: gene Location: 123470-125155 bp Feature: RT Description: RVT_N Location: 123527-123767 bp Feature: RT Description: RVT_N Location: 1 23527-1 23767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123815-124451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2381 5-1 24451 bp Feature: domain Description: GIIM Note: maturase Location: 124505-124736 bp Feature: domain Description: GIIM Note: maturase Location: 1 24505-1 24736 bp Feature: domain Description: HNH Note: nucleases Location: 124988-125126 bp Feature: domain Description: HNH Note: nucleases Location: 1 24988-1 251 26 bp Feature: gene Location: 125483-125620 bp Feature: gene Location: 125879-127000 bp Feature: domain Description: COG3177 Location: 125897-126989 bp Feature: domain Description: COG31 77 Location: 1 25897-1 26989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )