myRT

myRT report for GCA_002193825.1_ASM219382v1

Download annotations/find similar RTs

Seq: NIOX01000078.1 Pseudomonas aeruginosa strain 6005 6005_NODE_29.ctg_1, whole genome shotgun sequence (97960 bp)
Overview 1 RT 1: 1019-11327 bp 2 RT 2: 27586-35779 bp Neighborhood of RT #1 [1019, 11329] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [27586, 35793] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 1019-2140 bp Feature: domain Description: COG3177 Location: 1037-2129 bp Feature: domain Description: COG31 77 Location: 1 037-21 29 bp Feature: gene Location: 2402-2563 bp Feature: gene Location: 2866-4551 bp Feature: RT Description: RVT_N Location: 2923-3163 bp Feature: RT Description: RVT_N Location: 2923-31 63 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3211-3847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 1 -3847 bp Feature: domain Description: GIIM Note: maturase Location: 3901-4132 bp Feature: domain Description: GIIM Note: maturase Location: 3901 -41 32 bp Feature: domain Description: HNH Note: nucleases Location: 4384-4522 bp Feature: domain Description: HNH Note: nucleases Location: 4384-4522 bp Feature: gene Location: 5632-9369 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5740-6397 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5740-6397 bp Feature: domain Description: PRK09776 Location: 6610-7081 bp Feature: domain Description: PRK09776 Location: 661 0-7081 bp Feature: domain Description: PAS Location: 7138-7663 bp Feature: domain Description: PAS Location: 71 38-7663 bp Feature: domain Description: PRK10060 Location: 7672-9319 bp Feature: domain Description: PRK1 0060 Location: 7672-931 9 bp Feature: gene Location: 9476-11329 bp Feature: domain Description: PRK05658 Location: 9488-11327 bp Feature: domain Description: PRK05658 Location: 9488-1 1 327 bp Feature: gene Location: 27586-28878 bp Feature: domain Description: PRK10770 Location: 27676-28870 bp Feature: domain Description: PRK1 0770 Location: 27676-28870 bp Feature: gene Location: 28859-31660 bp Feature: domain Description: LptD Location: 29054-31646 bp Feature: domain Description: LptD Location: 29054-31 646 bp Feature: gene Location: 31793-33505 bp Feature: RT Description: RVT_N Location: 31850-32093 bp Feature: RT Description: RVT_N Location: 31 850-32093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32138-32771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 38-32771 bp Feature: domain Description: YkfC Location: 32984-33134 bp Feature: domain Description: YkfC Location: 32984-331 34 bp Feature: domain Description: HNH Note: nucleases Location: 33311-33449 bp Feature: domain Description: HNH Note: nucleases Location: 3331 1 -33449 bp Feature: gene Location: 33692-33904 bp Feature: gene Location: 34777-35793 bp Feature: domain Description: COG3178 Location: 34780-35779 bp Feature: domain Description: COG31 78 Location: 34780-35779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: NIOX01000014.1 Pseudomonas aeruginosa strain 6005 6005_NODE_7.ctg_1, whole genome shotgun sequence (179786 bp)
Overview 1 RT 1: 123378-130494 bp Neighborhood of RT #1 [123378, 130505] PRK10604 OmpR RVT_N RVT-GII GIIM HNH tig clpP Feature: gene Location: 123378-124664 bp Feature: domain Description: PRK10604 Location: 123381-124653 bp Feature: domain Description: PRK10604 Location: 12 3381-12 4653 bp Feature: gene Location: 124665-125372 bp Feature: domain Description: OmpR Location: 124689-125355 bp Feature: domain Description: OmpR Location: 12 4689-12 5355 bp Feature: gene Location: 126627-128330 bp Feature: RT Description: RVT_N Location: 126684-126927 bp Feature: RT Description: RVT_N Location: 12 6684-12 692 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126972-127608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 6972 -12 7608 bp Feature: domain Description: GIIM Note: maturase Location: 127659-127893 bp Feature: domain Description: GIIM Note: maturase Location: 12 7659-12 7893 bp Feature: domain Description: HNH Note: nucleases Location: 128145-128283 bp Feature: domain Description: HNH Note: nucleases Location: 12 8145-12 82 83 bp Feature: gene Location: 128460-129770 bp Feature: domain Description: tig Location: 128463-129741 bp Feature: domain Description: tig Location: 12 8463-12 9741 bp Feature: gene Location: 129864-130505 bp Feature: domain Description: clpP Location: 129918-130494 bp Feature: domain Description: clpP Location: 12 9918-130494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10604 (sensor protein RstB; Provisional), OmpR (COG0745), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), tig (TIGR00115), clpP

Seq: NIOX01000148.1 Pseudomonas aeruginosa strain 6005 6005_NODE_17.ctg_1, whole genome shotgun sequence (127682 bp)
Overview 1 RT 1: 69349-74232 bp Neighborhood of RT #1 [69349, 74240] PRK13360 COG3450 RVT_N RVT-GII YkfC HNHc rpmG Feature: gene Location: 69349-70683 bp Feature: domain Description: PRK13360 Location: 69352-70675 bp Feature: domain Description: PRK13 3 60 Location: 693 52-70675 bp Feature: gene Location: 70749-71111 bp Feature: domain Description: COG3450 Location: 70752-71097 bp Feature: domain Description: COG3 450 Location: 70752-71097 bp Feature: gene Location: 71326-73023 bp Feature: RT Description: RVT_N Location: 71383-71626 bp Feature: RT Description: RVT_N Location: 713 83 -71626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71671-72307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71671-723 07 bp Feature: domain Description: YkfC Location: 72529-72664 bp Feature: domain Description: YkfC Location: 72529-72664 bp Feature: domain Description: HNHc Note: nucleases Location: 72811-72976 bp Feature: domain Description: HNHc Note: nucleases Location: 72811-72976 bp Feature: gene Location: 73219-73596 bp Feature: gene Location: 74085-74240 bp Feature: domain Description: rpmG Location: 74088-74232 bp Feature: domain Description: rpmG Location: 74088-7423 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13360 (omega amino acid--pyruvate transaminase; Provisional), COG3450 (Predicted enzyme of the cupin superfamily ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), rpmG (PRK00595)