myRT

myRT report for GCA_002193905.1_ASM219390v1

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Seq: NIPF01000024.1 Pseudomonas aeruginosa strain 833 833_NODE_22.ctg_1, whole genome shotgun sequence (126408 bp)
Overview 1 RT 1: 50081-58268 bp 2 RT 2: 74532-84826 bp Neighborhood of RT #1 [50081, 58276] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74532, 84837] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50081-51097 bp Feature: domain Description: COG3178 Location: 50084-51083 bp Feature: domain Description: COG31 78 Location: 50084-51 083 bp Feature: gene Location: 51969-52181 bp Feature: gene Location: 52369-54081 bp Feature: RT Description: RVT_N Location: 52426-52669 bp Feature: RT Description: RVT_N Location: 52426-52669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52714-53350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5271 4-53350 bp Feature: domain Description: YkfC Location: 53557-53710 bp Feature: domain Description: YkfC Location: 53557-5371 0 bp Feature: domain Description: HNH Note: nucleases Location: 53887-54025 bp Feature: domain Description: HNH Note: nucleases Location: 53887-54025 bp Feature: gene Location: 54214-57003 bp Feature: domain Description: LptD Location: 54409-56989 bp Feature: domain Description: LptD Location: 54409-56989 bp Feature: gene Location: 56984-58276 bp Feature: domain Description: PRK10770 Location: 57074-58268 bp Feature: domain Description: PRK1 0770 Location: 57074-58268 bp Feature: gene Location: 74532-76385 bp Feature: domain Description: PRK05658 Location: 74544-76383 bp Feature: domain Description: PRK05658 Location: 74544-76383 bp Feature: gene Location: 76492-80229 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76600-77257 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76600-77257 bp Feature: domain Description: PRK09776 Location: 77470-77941 bp Feature: domain Description: PRK09776 Location: 77470-77941 bp Feature: domain Description: PAS Location: 77998-78523 bp Feature: domain Description: PAS Location: 77998-78523 bp Feature: domain Description: PRK10060 Location: 78532-80179 bp Feature: domain Description: PRK1 0060 Location: 78532-801 79 bp Feature: gene Location: 81307-82992 bp Feature: RT Description: RVT_N Location: 81364-81604 bp Feature: RT Description: RVT_N Location: 81 364-81 604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81652-82288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 652-82288 bp Feature: domain Description: GIIM Note: maturase Location: 82342-82573 bp Feature: domain Description: GIIM Note: maturase Location: 82342-82573 bp Feature: domain Description: HNH Note: nucleases Location: 82825-82963 bp Feature: domain Description: HNH Note: nucleases Location: 82825-82963 bp Feature: gene Location: 83320-83457 bp Feature: gene Location: 83716-84837 bp Feature: domain Description: COG3177 Location: 83734-84826 bp Feature: domain Description: COG31 77 Location: 83734-84826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )