myRT

myRT report for GCA_002193925.1_ASM219392v1

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Seq: NIOV01000031.1 Pseudomonas aeruginosa strain 2671 2671_NODE_46.ctg_1, whole genome shotgun sequence (44017 bp)
Overview 1 RT 1: 40034-43781 bp Neighborhood of RT #1 [40034, 43885] COG4127 AlpA RVT-UG5 nitrilase Feature: gene Location: 40034-41026 bp Ori: OWI63701.1 Feature: domain Description: COG4127 Location: 40040-41015 bp Feature: domain Description: COG41 27 Location: 40040-41 01 5 bp Feature: gene Location: 41031-41243 bp Ori: OWI63702.1 Feature: domain Description: AlpA Location: 41034-41205 bp Feature: domain Description: AlpA Location: 41 034-41 205 bp Feature: gene Location: 41396-43885 bp Ori: OWI63703.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 41402-41837 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 41 402-41 837 bp Feature: domain Description: nitrilase Location: 43199-43781 bp Feature: domain Description: nitrilase Location: 431 99-43781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), AlpA (COG3311), RVT-UG5, nitrilase (cl11424)

Seq: NIOV01000002.1 Pseudomonas aeruginosa strain 2671 2671_NODE_88.ctg_1, whole genome shotgun sequence (2418 bp)
Overview 1 RT 1: 83-1754 bp Neighborhood of RT #1 [83, 1801] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 83-1801 bp Ori: OWI67675.1 Gene: ltrA Feature: domain Description: RVT_N Location: 140-377 bp Feature: domain Description: RVT_N Location: 140-377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-1079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 8-1079 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1364 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1364 bp Feature: domain Description: HNHc Note: nucleases Location: 1598-1754 bp Feature: domain Description: HNHc Note: nucleases Location: 1598-1754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)