myRT

myRT report for GCA_002194055.1_ASM219405v1

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Seq: NIPH01000103.1 Pseudomonas aeruginosa strain 837 837_NODE_6.ctg_1, whole genome shotgun sequence (260180 bp)
Overview 1 RT 1: 50093-58280 bp 2 RT 2: 74544-84841 bp Neighborhood of RT #1 [50093, 58288] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74544, 84852] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50093-51109 bp Feature: domain Description: COG3178 Location: 50096-51095 bp Feature: domain Description: COG31 78 Location: 50096-51 095 bp Feature: gene Location: 51982-52194 bp Feature: gene Location: 52381-54093 bp Feature: RT Description: RVT_N Location: 52438-52681 bp Feature: RT Description: RVT_N Location: 52438-52681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52726-53359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52726-53359 bp Feature: domain Description: YkfC Location: 53572-53722 bp Feature: domain Description: YkfC Location: 53572-53722 bp Feature: domain Description: HNH Note: nucleases Location: 53899-54037 bp Feature: domain Description: HNH Note: nucleases Location: 53899-54037 bp Feature: gene Location: 54226-57015 bp Feature: domain Description: LptD Location: 54421-57001 bp Feature: domain Description: LptD Location: 54421 -57001 bp Feature: gene Location: 56996-58288 bp Feature: domain Description: PRK10770 Location: 57086-58280 bp Feature: domain Description: PRK1 0770 Location: 57086-58280 bp Feature: gene Location: 74544-76397 bp Feature: domain Description: PRK05658 Location: 74556-76395 bp Feature: domain Description: PRK05658 Location: 74556-76395 bp Feature: gene Location: 76504-80241 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76612-77269 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 7661 2-77269 bp Feature: domain Description: PRK09776 Location: 77482-77953 bp Feature: domain Description: PRK09776 Location: 77482-77953 bp Feature: domain Description: PAS Location: 78010-78535 bp Feature: domain Description: PAS Location: 7801 0-78535 bp Feature: domain Description: PRK10060 Location: 78544-80191 bp Feature: domain Description: PRK1 0060 Location: 78544-801 91 bp Feature: gene Location: 81322-83007 bp Feature: RT Description: RVT_N Location: 81379-81619 bp Feature: RT Description: RVT_N Location: 81 379-81 61 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81667-82303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 667-82303 bp Feature: domain Description: GIIM Note: maturase Location: 82357-82588 bp Feature: domain Description: GIIM Note: maturase Location: 82357-82588 bp Feature: domain Description: HNH Note: nucleases Location: 82840-82978 bp Feature: domain Description: HNH Note: nucleases Location: 82840-82978 bp Feature: gene Location: 83335-83472 bp Feature: gene Location: 83731-84852 bp Feature: domain Description: COG3177 Location: 83749-84841 bp Feature: domain Description: COG31 77 Location: 83749-84841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )