myRT

myRT report for GCA_002194075.1_ASM219407v1

Download annotations/find similar RTs

Seq: NIOR01000018.1 Pseudomonas aeruginosa strain 2353 2353_NODE_14.ctg_1, whole genome shotgun sequence (160299 bp)
Overview 1 RT 1: 63854-72026 bp Neighborhood of RT #1 [63854, 72034] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 63854-64870 bp Ori: OWI47203.1 Feature: domain Description: COG3178 Location: 63857-64856 bp Feature: domain Description: COG31 78 Location: 63857-64856 bp Feature: gene Location: 65743-65955 bp Feature: gene Location: 66142-67854 bp Ori: OWI47205.1 Gene: ltrA Feature: domain Description: RVT_N Location: 66199-66442 bp Feature: domain Description: RVT_N Location: 661 99-66442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66487-67120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66487-671 20 bp Feature: domain Description: YkfC Location: 67333-67483 bp Feature: domain Description: YkfC Location: 67333-67483 bp Feature: domain Description: HNH Note: nucleases Location: 67660-67798 bp Feature: domain Description: HNH Note: nucleases Location: 67660-67798 bp Feature: gene Location: 67987-70761 bp Ori: OWI47206.1 Feature: domain Description: LptD Location: 68182-70747 bp Feature: domain Description: LptD Location: 681 82-70747 bp Feature: gene Location: 70742-72034 bp Ori: OWI47207.1 Feature: domain Description: PRK10770 Location: 70832-72026 bp Feature: domain Description: PRK1 0770 Location: 70832-72026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: NIOR01000025.1 Pseudomonas aeruginosa strain 2353 2353_NODE_1.ctg_1, whole genome shotgun sequence (494561 bp)
Overview 1 RT 1: 490570-494317 bp Neighborhood of RT #1 [490570, 494421] COG4127 AlpA RVT-UG5 nitrilase Feature: gene Location: 490570-491562 bp Ori: OWI44879.1 Feature: domain Description: COG4127 Location: 490576-491551 bp Feature: domain Description: COG412 7 Location: 490576-491551 bp Feature: gene Location: 491567-491779 bp Ori: OWI44880.1 Feature: domain Description: AlpA Location: 491570-491741 bp Feature: domain Description: AlpA Location: 491570-491741 bp Feature: gene Location: 491932-494421 bp Ori: OWI44881.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 491938-492373 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 491938-492 373 bp Feature: domain Description: nitrilase Location: 493735-494317 bp Feature: domain Description: nitrilase Location: 493735-494317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), AlpA (COG3311), RVT-UG5, nitrilase (cl11424)

Seq: NIOR01000012.1 Pseudomonas aeruginosa strain 2353 2353_NODE_93.ctg_1, whole genome shotgun sequence (2433 bp)
Overview 1 RT 1: 83-1754 bp Neighborhood of RT #1 [83, 1801] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 83-1801 bp Ori: OWI48149.1 Gene: ltrA Feature: domain Description: RVT_N Location: 140-377 bp Feature: domain Description: RVT_N Location: 140-3 77 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-1079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-1079 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1364 bp Feature: domain Description: GIIM Note: maturase Location: 113 3 -13 64 bp Feature: domain Description: HNHc Note: nucleases Location: 1598-1754 bp Feature: domain Description: HNHc Note: nucleases Location: 1598-1754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)