myRT

myRT report for GCA_002194135.1_ASM219413v1

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Seq: NIPG01000042.1 Pseudomonas aeruginosa strain 836 836_NODE_6.ctg_1, whole genome shotgun sequence (289143 bp)
Overview 1 RT 1: 195254-205559 bp Neighborhood of RT #1 [195254, 205561] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 195254-196375 bp Feature: domain Description: COG3177 Location: 195272-196364 bp Feature: domain Description: COG31 77 Location: 1 95272-1 96364 bp Feature: gene Location: 196634-196770 bp Feature: gene Location: 197098-198783 bp Feature: RT Description: RVT_N Location: 197155-197395 bp Feature: RT Description: RVT_N Location: 1 971 55-1 97395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197443-198079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 97443-1 98079 bp Feature: domain Description: GIIM Note: maturase Location: 198133-198364 bp Feature: domain Description: GIIM Note: maturase Location: 1 981 33-1 98364 bp Feature: domain Description: HNH Note: nucleases Location: 198616-198754 bp Feature: domain Description: HNH Note: nucleases Location: 1 9861 6-1 98754 bp Feature: gene Location: 199864-203601 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 199972-200629 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 99972-200629 bp Feature: domain Description: PRK09776 Location: 200842-201313 bp Feature: domain Description: PRK09776 Location: 200842-201 31 3 bp Feature: domain Description: PAS Location: 201358-201895 bp Feature: domain Description: PAS Location: 201 358-201 895 bp Feature: domain Description: PRK10060 Location: 201904-203551 bp Feature: domain Description: PRK1 0060 Location: 201 904-203551 bp Feature: gene Location: 203708-205561 bp Feature: domain Description: PRK05658 Location: 203720-205559 bp Feature: domain Description: PRK05658 Location: 203720-205559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)