myRT

myRT report for GCA_002196005.1_ASM219600v1

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Seq: NHOM01000033.1 Burkholderia sp. Bk sc_033, whole genome shotgun sequence (8923 bp)
Overview 1 RT 1: 6362-8518 bp Neighborhood of RT #1 [6362, 8787] HTH_1 PBP2_PAO1_like Rve RVT-GII GIIM Feature: gene Location: 6362-7258 bp Feature: domain Description: HTH_1 Location: 6380-6560 bp Feature: domain Description: HTH_1 Location: 6380-6560 bp Feature: domain Description: PBP2_PAO1_like Location: 6644-7229 bp Feature: domain Description: PBP2_PAO1 _like Location: 6644-7229 bp Feature: gene Location: 7391-7864 bp Feature: domain Description: Rve Location: 7424-7817 bp Feature: domain Description: Rve Location: 7424-781 7 bp Feature: gene Location: 7897-8787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7900-8245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7900-8245 bp Feature: domain Description: GIIM Note: maturase Location: 8329-8518 bp Feature: domain Description: GIIM Note: maturase Location: 8329-851 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_PAO1_like (cd08412), Rve (COG3316), RVT-GII, GIIM (pfam08388)

Seq: NHOM01000024.1 Burkholderia sp. Bk sc_024, whole genome shotgun sequence (57702 bp)
Overview 1 RT 1: 52911-57558 bp Neighborhood of RT #1 [52911, 57558] GDH RVT-GII PinE Zn_ribbon_recom HTH_17 HTH_17 RVT-GII Feature: gene Location: 52911-53180 bp Feature: domain Description: GDH Location: 52917-53157 bp Feature: domain Description: GDH Location: 52 917-53157 bp Feature: gene Location: 53240-53563 bp Feature: gene Location: 53567-54211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53978-54212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53978-542 12 bp Feature: gene Location: 54235-56448 bp Feature: domain Description: PinE Location: 54286-54871 bp Feature: domain Description: PinE Location: 542 86-54871 bp Feature: domain Description: Zn_ribbon_recom Location: 55231-55399 bp Feature: domain Description: Zn_ribbon_recom Location: 552 31-55399 bp Feature: domain Description: HTH_17 Location: 56110-56230 bp Feature: domain Description: HTH_17 Location: 56110-562 30 bp Feature: domain Description: HTH_17 Location: 56293-56407 bp Feature: domain Description: HTH_17 Location: 562 93-56407 bp Feature: gene Location: 56915-57124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56927-57089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5692 7-57089 bp Feature: gene Location: 57229-57558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDH (cd05301), RVT-GII, PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728)

Seq: NHOM01000028.1 Burkholderia sp. Bk sc_028, whole genome shotgun sequence (19439 bp)
Overview 1 RT 1: 14373-19108 bp Neighborhood of RT #1 [14373, 19425] PolY_like COG4544 RVT-GII GIIM Resolvase Recombinase Zn_ribbon_recom Feature: gene Location: 14373-15857 bp Feature: domain Description: PolY_like Location: 14391-15390 bp Feature: domain Description: PolY_like Location: 143 91-153 90 bp Feature: gene Location: 15787-16494 bp Feature: domain Description: COG4544 Location: 15982-16315 bp Feature: domain Description: COG4544 Location: 15982-163 15 bp Feature: gene Location: 16675-17457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16678-16936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16678-1693 6 bp Feature: domain Description: GIIM Note: maturase Location: 16987-17221 bp Feature: domain Description: GIIM Note: maturase Location: 16987-17221 bp Feature: gene Location: 17944-19425 bp Feature: domain Description: Resolvase Location: 17965-18403 bp Feature: domain Description: Resolvase Location: 17965-18403 bp Feature: domain Description: Recombinase Location: 18499-18859 bp Feature: domain Description: Recombinase Location: 18499-18859 bp Feature: domain Description: Zn_ribbon_recom Location: 18904-19108 bp Feature: domain Description: Zn_ribbon_recom Location: 18904-19108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII, GIIM (pfam08388), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: NHOM01000032.1 Burkholderia sp. Bk sc_032, whole genome shotgun sequence (16541 bp)
Overview 1 RT 1: 104-2616 bp Neighborhood of RT #1 [104, 2616] RVT_N RVT-GII Feature: gene Location: 104-880 bp Feature: RT Description: RVT_N Location: 152-395 bp Feature: RT Description: RVT_N Location: 152-395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440-848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 0-84 8 bp Feature: gene Location: 1946-2260 bp Feature: gene Location: 2341-2616 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII