myRT

myRT report for GCA_002197815.1_ASM219781v1

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Seq: NIUB01000079.1 Pseudomonas oleovorans subsp. oleovorans strain DSM 1045 PSOLE_contig000079, whole genome shotgun sequence (1929 bp)
Overview 1 RT 1: 72-1230 bp Neighborhood of RT #1 [72, 1397] RVT-GII GIIM Feature: gene Location: 72-1397 bp Ori: OWK35371.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333-948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333-948 bp Feature: domain Description: GIIM Note: maturase Location: 1002-1230 bp Feature: domain Description: GIIM Note: maturase Location: 1 002-1 230 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NIUB01000020.1 Pseudomonas oleovorans subsp. oleovorans strain DSM 1045 PSOLE_contig000020, whole genome shotgun sequence (93955 bp)
Overview 1 RT 1: 78658-82758 bp Neighborhood of RT #1 [78658, 82880] YafY YafY RVT-UG17 SLATT_5 P22_AR_N Feature: gene Location: 78658-78804 bp Feature: gene Location: 79186-80064 bp Ori: OWK44223.1 Feature: domain Description: YafY Location: 79270-79348 bp Feature: domain Description: YafY Location: 792 70-79348 bp Feature: domain Description: YafY Location: 79522-79786 bp Feature: domain Description: YafY Location: 7952 2 -79786 bp Feature: gene Location: 80237-81601 bp Ori: OWK44224.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 80468-81068 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 80468-81068 bp Feature: gene Location: 81601-82140 bp Ori: OWK44225.1 Feature: domain Description: SLATT_5 Location: 81607-82105 bp Feature: domain Description: SLATT_5 Location: 81607-82 105 bp Feature: gene Location: 82617-82880 bp Ori: OWK44226.1 Feature: domain Description: P22_AR_N Location: 82635-82758 bp Feature: domain Description: P2 2 _AR_N Location: 82 635-82 758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YafY (COG2378), RVT-UG17, SLATT_5 (pfam18160), P22_AR_N (pfam10547)

Seq: NIUB01000091.1 Pseudomonas oleovorans subsp. oleovorans strain DSM 1045 PSOLE_contig000091, whole genome shotgun sequence (1111 bp)
Overview 1 RT 1: 72-924 bp Neighborhood of RT #1 [72, 1091] RVT-GII GIIM Feature: gene Location: 72-1091 bp Ori: OWK35231.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78-642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78-642 bp Feature: domain Description: GIIM Note: maturase Location: 696-924 bp Feature: domain Description: GIIM Note: maturase Location: 696-924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NIUB01000027.1 Pseudomonas oleovorans subsp. oleovorans strain DSM 1045 PSOLE_contig000027, whole genome shotgun sequence (69664 bp)
Overview 1 RT 1: 65542-69447 bp Neighborhood of RT #1 [65542, 69488] TlyC TlyC RVT-GII GIIM HNHc Feature: gene Location: 65542-66558 bp Ori: OWK42558.1 Feature: domain Description: TlyC Location: 65560-66535 bp Feature: domain Description: TlyC Location: 65560-66535 bp Feature: gene Location: 66555-67928 bp Ori: OWK42559.1 Gene: corC_4 Feature: domain Description: TlyC Location: 66579-67902 bp Feature: domain Description: TlyC Location: 66579-67902 bp Feature: gene Location: 68166-69488 bp Ori: OWK42560.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68169-68757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68169-68757 bp Feature: domain Description: GIIM Note: maturase Location: 68835-69063 bp Feature: domain Description: GIIM Note: maturase Location: 68835-69063 bp Feature: domain Description: HNHc Note: nucleases Location: 69291-69447 bp Feature: domain Description: HNHc Note: nucleases Location: 69291-694 4 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TlyC (COG1253), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NIUB01000034.1 Pseudomonas oleovorans subsp. oleovorans strain DSM 1045 PSOLE_contig000034, whole genome shotgun sequence (52383 bp)
Overview 1 RT 1: 11624-20656 bp Neighborhood of RT #1 [11624, 20829] TIGR02687 YeeA RVT-UG5 AAA_15 AAA_15 Feature: gene Location: 11624-14131 bp Ori: OWK40722.1 Feature: domain Description: TIGR02687 Location: 11639-14078 bp Feature: domain Description: TIGR02687 Location: 11639-14078 bp Feature: gene Location: 14139-15920 bp Ori: OWK40723.1 Feature: domain Description: YeeA Location: 14862-15783 bp Feature: domain Description: YeeA Location: 14862-15 783 bp Feature: gene Location: 15917-18937 bp Ori: OWK40724.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 16412-16883 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 16412-16883 bp Feature: gene Location: 18996-19526 bp Feature: gene Location: 19519-20829 bp Ori: OWK40726.1 Feature: domain Description: AAA_15 Location: 19525-19684 bp Feature: domain Description: AAA_15 Location: 195 25 -19684 bp Feature: domain Description: AAA_15 Location: 20377-20656 bp Feature: domain Description: AAA_15 Location: 20377-2065 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02687 (TIGR02687 family protein), YeeA (COG1002), RVT-UG5, AAA_15 (pfam13175)

Seq: NIUB01000087.1 Pseudomonas oleovorans subsp. oleovorans strain DSM 1045 PSOLE_contig000087, whole genome shotgun sequence (1431 bp)
Overview 1 RT 1: 86-1247 bp Neighborhood of RT #1 [86, 1399] RVT-GII GIIM Feature: gene Location: 86-1399 bp Ori: OWK35361.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362-980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36 2-980 bp Feature: domain Description: GIIM Note: maturase Location: 1037-1247 bp Feature: domain Description: GIIM Note: maturase Location: 1037-1247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NIUB01000049.1 Pseudomonas oleovorans subsp. oleovorans strain DSM 1045 PSOLE_contig000049, whole genome shotgun sequence (34093 bp)
Overview 1 RT 1: 15-2792 bp Neighborhood of RT #1 [15, 2797] RVT-GII GIIM HNHc PRK05579 dut Feature: gene Location: 15-923 bp Ori: OWK38775.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21-192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21-192 bp Feature: domain Description: GIIM Note: maturase Location: 270-498 bp Feature: domain Description: GIIM Note: maturase Location: 27 0-498 bp Feature: domain Description: HNHc Note: nucleases Location: 726-882 bp Feature: domain Description: HNHc Note: nucleases Location: 7 26-882 bp Feature: gene Location: 1131-2339 bp Ori: OWK38776.1 Gene: coaBC Feature: domain Description: PRK05579 Location: 1137-2331 bp Feature: domain Description: PRK0557 9 Location: 1137 -2331 bp Feature: gene Location: 2342-2797 bp Ori: OWK38777.1 Gene: dut Feature: domain Description: dut Location: 2348-2792 bp Feature: domain Description: dut Location: 2348-27 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05579 (bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated), dut (TIGR00576)