myRT

myRT report for GCA_002198775.1_ASM219877v1

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Seq: NHQL01000009.1 Cronobacter sakazakii strain MOD1-comp11 COMP11_contig_9, whole genome shotgun sequence (583398 bp)
Overview 1 RT 1: 475570-481026 bp Neighborhood of RT #1 [475570, 481040] DUF4156 DUF2188 RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 475570-475923 bp Feature: domain Description: DUF4156 Location: 475642-475915 bp Feature: domain Description: DUF41 56 Location: 475642-47591 5 bp Feature: gene Location: 476295-476519 bp Feature: domain Description: DUF2188 Location: 476313-476490 bp Feature: domain Description: DUF21 88 Location: 47631 3-476490 bp Feature: gene Location: 476626-478284 bp Feature: RT Description: RVT_N Location: 476677-476920 bp Feature: RT Description: RVT_N Location: 476677-476920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 476965-477610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 476965-47761 0 bp Feature: domain Description: GIIM Note: maturase Location: 477664-477895 bp Feature: domain Description: GIIM Note: maturase Location: 477664-477895 bp Feature: domain Description: HNHc Note: nucleases Location: 478108-478267 bp Feature: domain Description: HNHc Note: nucleases Location: 4781 08-478267 bp Feature: gene Location: 478452-478681 bp Feature: gene Location: 479397-481040 bp Feature: domain Description: groEL Location: 479403-481026 bp Feature: domain Description: groEL Location: 479403-481 026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4156 (pfam13698), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852)

Seq: NHQL01000010.1 Cronobacter sakazakii strain MOD1-comp11 COMP11_contig_10, whole genome shotgun sequence (312054 bp)
Overview 1 RT 1: 95313-102272 bp Neighborhood of RT #1 [95313, 102289] PRK09692 RVT-Retrons Ogr_Delta COG4643 COG5519 Feature: gene Location: 95313-96479 bp Feature: domain Description: PRK09692 Location: 95322-96468 bp Feature: domain Description: PRK09692 Location: 9532 2 -96468 bp Feature: gene Location: 96476-97189 bp Feature: gene Location: 97179-98366 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 97323-97908 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9732 3-97908 bp Feature: gene Location: 99058-99330 bp Feature: domain Description: Ogr_Delta Location: 99079-99217 bp Feature: domain Description: Ogr_Delta Location: 99079-992 17 bp Feature: gene Location: 99611-102289 bp Feature: domain Description: COG4643 Location: 99620-100559 bp Feature: domain Description: COG4643 Location: 9962 0-100559 bp Feature: domain Description: COG5519 Location: 100661-102272 bp Feature: domain Description: COG5519 Location: 100661-102 2 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, Ogr_Delta (pfam04606), COG4643 (Uncharacterized domain associated with phage/plasmid primase ), COG5519 (Uncharcterized protein, DUF927 family )