myRT

myRT report for GCA_002198805.1_ASM219880v1

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Seq: NEXY01000009.1 Cronobacter sakazakii strain MOD1-comp20 csakComp20_contig_9, whole genome shotgun sequence (161946 bp)
Overview 1 RT 1: 102358-107820 bp Neighborhood of RT #1 [102358, 107828] groEL RVT_N RVT-GII GIIM HNHc DUF2188 DUF4156 Feature: gene Location: 102358-104001 bp Feature: domain Description: groEL Location: 102364-103987 bp Feature: domain Description: groEL Location: 1 02364-1 03987 bp Feature: gene Location: 104717-104946 bp Feature: gene Location: 105114-106772 bp Feature: RT Description: RVT_N Location: 105165-105408 bp Feature: RT Description: RVT_N Location: 1 051 65-1 05408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105453-106098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 05453-1 06098 bp Feature: domain Description: GIIM Note: maturase Location: 106152-106383 bp Feature: domain Description: GIIM Note: maturase Location: 1 061 52-1 06383 bp Feature: domain Description: HNHc Note: nucleases Location: 106596-106755 bp Feature: domain Description: HNHc Note: nucleases Location: 1 06596-1 06755 bp Feature: gene Location: 106879-107103 bp Feature: domain Description: DUF2188 Location: 106897-107074 bp Feature: domain Description: DUF21 88 Location: 1 06897-1 07074 bp Feature: gene Location: 107475-107828 bp Feature: domain Description: DUF4156 Location: 107547-107820 bp Feature: domain Description: DUF41 56 Location: 1 07547-1 07820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF2188 (pfam09954), DUF4156 (pfam13698)

Seq: NEXY01000042.1 Cronobacter sakazakii strain MOD1-comp20 csakComp20_contig_42, whole genome shotgun sequence (138086 bp)
Overview 1 RT 1: 52051-59016 bp Neighborhood of RT #1 [52051, 59027] COG4643 COG5519 Ogr_Delta RVT-Retrons PRK09692 Feature: gene Location: 52051-54729 bp Feature: domain Description: COG4643 Location: 52060-52999 bp Feature: domain Description: COG4643 Location: 52 060-52 999 bp Feature: domain Description: COG5519 Location: 53101-54712 bp Feature: domain Description: COG5519 Location: 53101-54712 bp Feature: gene Location: 55010-55282 bp Feature: domain Description: Ogr_Delta Location: 55031-55169 bp Feature: domain Description: Ogr_Delta Location: 55031-55169 bp Feature: gene Location: 55974-57161 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56118-56703 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56118-56703 bp Feature: gene Location: 57151-57864 bp Feature: gene Location: 57861-59027 bp Feature: domain Description: PRK09692 Location: 57870-59016 bp Feature: domain Description: PRK09692 Location: 57870-59016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4643 (Uncharacterized domain associated with phage/plasmid primase ), COG5519 (Uncharcterized protein, DUF927 family ), Ogr_Delta (pfam04606), RVT-Retrons, PRK09692 (Integrase; provisional)