myRT

myRT report for GCA_002198815.1_ASM219881v1

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Seq: NHQM01000021.1 Cronobacter sakazakii strain MOD1-comp19 COMP19_contig_21, whole genome shotgun sequence (154325 bp)
Overview 1 RT 1: 52041-59006 bp Neighborhood of RT #1 [52041, 59017] COG4643 COG5519 Ogr_Delta RVT-Retrons PRK09692 Feature: gene Location: 52041-54719 bp Feature: domain Description: COG4643 Location: 52050-52989 bp Feature: domain Description: COG4643 Location: 52050-52989 bp Feature: domain Description: COG5519 Location: 53091-54702 bp Feature: domain Description: COG551 9 Location: 53091 -54702 bp Feature: gene Location: 55000-55272 bp Feature: domain Description: Ogr_Delta Location: 55021-55159 bp Feature: domain Description: Ogr_Delta Location: 55021 -551 59 bp Feature: gene Location: 55964-57151 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56108-56693 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 561 08-56693 bp Feature: gene Location: 57141-57854 bp Feature: gene Location: 57851-59017 bp Feature: domain Description: PRK09692 Location: 57860-59006 bp Feature: domain Description: PRK09692 Location: 57860-59006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4643 (Uncharacterized domain associated with phage/plasmid primase ), COG5519 (Uncharcterized protein, DUF927 family ), Ogr_Delta (pfam04606), RVT-Retrons, PRK09692 (Integrase; provisional)

Seq: NHQM01000008.1 Cronobacter sakazakii strain MOD1-comp19 COMP19_contig_8, whole genome shotgun sequence (239460 bp)
Overview 1 RT 1: 102359-107821 bp Neighborhood of RT #1 [102359, 107829] groEL RVT_N RVT-GII GIIM HNHc DUF2188 DUF4156 Feature: gene Location: 102359-104002 bp Feature: domain Description: groEL Location: 102365-103988 bp Feature: domain Description: groEL Location: 102 365-103988 bp Feature: gene Location: 104718-104947 bp Feature: gene Location: 105115-106773 bp Feature: RT Description: RVT_N Location: 105166-105409 bp Feature: RT Description: RVT_N Location: 105166-105409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105454-106099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105454-106099 bp Feature: domain Description: GIIM Note: maturase Location: 106153-106384 bp Feature: domain Description: GIIM Note: maturase Location: 106153-106384 bp Feature: domain Description: HNHc Note: nucleases Location: 106597-106756 bp Feature: domain Description: HNHc Note: nucleases Location: 106597-106756 bp Feature: gene Location: 106880-107104 bp Feature: domain Description: DUF2188 Location: 106898-107075 bp Feature: domain Description: DUF2 188 Location: 106898-107075 bp Feature: gene Location: 107476-107829 bp Feature: domain Description: DUF4156 Location: 107548-107821 bp Feature: domain Description: DUF4156 Location: 107548-10782 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF2188 (pfam09954), DUF4156 (pfam13698)