myRT

myRT report for GCA_002198825.1_ASM219882v1

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Seq: NEYB01000014.1 Cronobacter sakazakii strain MOD1-comp49b csakComp49b_contig_14, whole genome shotgun sequence (99896 bp)
Overview 1 RT 1: 29523-36488 bp Neighborhood of RT #1 [29523, 36499] COG4643 COG5519 Ogr_Delta RVT-Retrons PRK09692 Feature: gene Location: 29523-32201 bp Feature: domain Description: COG4643 Location: 29532-30471 bp Feature: domain Description: COG4643 Location: 29532-30471 bp Feature: domain Description: COG5519 Location: 30573-32184 bp Feature: domain Description: COG551 9 Location: 30573-321 84 bp Feature: gene Location: 32482-32754 bp Feature: domain Description: Ogr_Delta Location: 32503-32641 bp Feature: domain Description: Ogr_Delta Location: 32503-32641 bp Feature: gene Location: 33446-34633 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33590-34175 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33590-341 75 bp Feature: gene Location: 34623-35336 bp Feature: gene Location: 35333-36499 bp Feature: domain Description: PRK09692 Location: 35342-36488 bp Feature: domain Description: PRK09692 Location: 35342-36488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4643 (Uncharacterized domain associated with phage/plasmid primase ), COG5519 (Uncharcterized protein, DUF927 family ), Ogr_Delta (pfam04606), RVT-Retrons, PRK09692 (Integrase; provisional)

Seq: NEYB01000070.1 Cronobacter sakazakii strain MOD1-comp49b csakComp49b_contig_70, whole genome shotgun sequence (44198 bp)
Overview 1 RT 1: 297-5753 bp Neighborhood of RT #1 [297, 5767] DUF4156 DUF2188 RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 297-650 bp Feature: domain Description: DUF4156 Location: 369-642 bp Feature: domain Description: DUF4156 Location: 369-642 bp Feature: gene Location: 1022-1246 bp Feature: domain Description: DUF2188 Location: 1040-1217 bp Feature: domain Description: DUF2 188 Location: 1040-12 17 bp Feature: gene Location: 1353-3011 bp Feature: RT Description: RVT_N Location: 1404-1647 bp Feature: RT Description: RVT_N Location: 1404-1647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1692-2337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1692 -2 337 bp Feature: domain Description: GIIM Note: maturase Location: 2391-2622 bp Feature: domain Description: GIIM Note: maturase Location: 2 391-2 62 2 bp Feature: domain Description: HNHc Note: nucleases Location: 2835-2994 bp Feature: domain Description: HNHc Note: nucleases Location: 2 835-2 994 bp Feature: gene Location: 3179-3408 bp Feature: gene Location: 4124-5767 bp Feature: domain Description: groEL Location: 4130-5753 bp Feature: domain Description: groEL Location: 4130-5753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF4156 (pfam13698), groEL (PRK12852)