myRT

myRT report for GCA_002198855.1_ASM219885v1

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Seq: NEYD01000089.1 Cronobacter sakazakii strain MOD1-comp54a csakComp54_contig_89, whole genome shotgun sequence (27858 bp)
Overview 1 RT 1: 7481-14440 bp Neighborhood of RT #1 [7481, 14457] PRK09692 RVT-Retrons Ogr_Delta COG4643 COG5519 Feature: gene Location: 7481-8647 bp Feature: domain Description: PRK09692 Location: 7490-8636 bp Feature: domain Description: PRK09692 Location: 7490-8636 bp Feature: gene Location: 8644-9357 bp Feature: gene Location: 9347-10534 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9491-10076 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9491 -1 0076 bp Feature: gene Location: 11226-11498 bp Feature: domain Description: Ogr_Delta Location: 11247-11385 bp Feature: domain Description: Ogr_Delta Location: 1 1 247-1 1 385 bp Feature: gene Location: 11779-14457 bp Feature: domain Description: COG4643 Location: 11788-12727 bp Feature: domain Description: COG4643 Location: 1 1 788-1 2727 bp Feature: domain Description: COG5519 Location: 12829-14440 bp Feature: domain Description: COG551 9 Location: 1 2829-1 4440 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ogr_Delta (pfam04606), COG4643 (Uncharacterized domain associated with phage/plasmid primase ), COG5519 (Uncharcterized protein, DUF927 family ), PRK09692 (Integrase; provisional), RVT-Retrons

Seq: NEYD01000087.1 Cronobacter sakazakii strain MOD1-comp54a csakComp54_contig_87, whole genome shotgun sequence (43961 bp)
Overview 1 RT 1: 2331-7787 bp Neighborhood of RT #1 [2331, 7801] DUF4156 DUF2188 RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 2331-2684 bp Feature: domain Description: DUF4156 Location: 2403-2676 bp Feature: domain Description: DUF4156 Location: 2 403-2 676 bp Feature: gene Location: 3056-3280 bp Feature: domain Description: DUF2188 Location: 3074-3251 bp Feature: domain Description: DUF2 188 Location: 3074-32 51 bp Feature: gene Location: 3387-5045 bp Feature: RT Description: RVT_N Location: 3438-3681 bp Feature: RT Description: RVT_N Location: 3438-3681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3726-4371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372 6-4371 bp Feature: domain Description: GIIM Note: maturase Location: 4425-4656 bp Feature: domain Description: GIIM Note: maturase Location: 442 5-4656 bp Feature: domain Description: HNHc Note: nucleases Location: 4869-5028 bp Feature: domain Description: HNHc Note: nucleases Location: 4869-502 8 bp Feature: gene Location: 5213-5442 bp Feature: gene Location: 6158-7801 bp Feature: domain Description: groEL Location: 6164-7787 bp Feature: domain Description: groEL Location: 6164-7787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4156 (pfam13698), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852)