myRT

myRT report for GCA_002198865.1_ASM219886v1

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Seq: NEYE01000039.1 Cronobacter sakazakii strain MOD1-comp57b csakComp57_contig_39, whole genome shotgun sequence (79231 bp)
Overview 1 RT 1: 73660-79122 bp Neighborhood of RT #1 [73660, 79130] groEL RVT_N RVT-GII GIIM HNHc DUF2188 DUF4156 Feature: gene Location: 73660-75303 bp Feature: domain Description: groEL Location: 73666-75289 bp Feature: domain Description: groEL Location: 73666-75289 bp Feature: gene Location: 76019-76248 bp Feature: gene Location: 76416-78074 bp Feature: RT Description: RVT_N Location: 76467-76710 bp Feature: RT Description: RVT_N Location: 76467-7671 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76755-77400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76755-77400 bp Feature: domain Description: GIIM Note: maturase Location: 77454-77685 bp Feature: domain Description: GIIM Note: maturase Location: 77454-77685 bp Feature: domain Description: HNHc Note: nucleases Location: 77898-78057 bp Feature: domain Description: HNHc Note: nucleases Location: 77898-78057 bp Feature: gene Location: 78181-78405 bp Feature: domain Description: DUF2188 Location: 78199-78376 bp Feature: domain Description: DUF21 88 Location: 781 99-78376 bp Feature: gene Location: 78777-79130 bp Feature: domain Description: DUF4156 Location: 78849-79122 bp Feature: domain Description: DUF41 56 Location: 78849-791 22 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF2188 (pfam09954), DUF4156 (pfam13698)

Seq: NEYE01000043.1 Cronobacter sakazakii strain MOD1-comp57b csakComp57_contig_43, whole genome shotgun sequence (80455 bp)
Overview 1 RT 1: 12642-19601 bp Neighborhood of RT #1 [12642, 19618] PRK09692 RVT-Retrons Ogr_Delta COG4643 COG5519 Feature: gene Location: 12642-13808 bp Feature: domain Description: PRK09692 Location: 12651-13797 bp Feature: domain Description: PRK09692 Location: 12 651-13797 bp Feature: gene Location: 13805-14518 bp Feature: gene Location: 14508-15695 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14652-15237 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14652 -152 37 bp Feature: gene Location: 16387-16659 bp Feature: domain Description: Ogr_Delta Location: 16408-16546 bp Feature: domain Description: Ogr_Delta Location: 16408-16546 bp Feature: gene Location: 16940-19618 bp Feature: domain Description: COG4643 Location: 16949-17888 bp Feature: domain Description: COG4643 Location: 16949-17888 bp Feature: domain Description: COG5519 Location: 17990-19601 bp Feature: domain Description: COG5519 Location: 17990-19601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, Ogr_Delta (pfam04606), COG4643 (Uncharacterized domain associated with phage/plasmid primase ), COG5519 (Uncharcterized protein, DUF927 family )