myRT

myRT report for GCA_002198945.1_ASM219894v1

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Seq: NEYC01000012.1 Cronobacter sakazakii strain MOD1-comp53b csakComp53b_contig_12, whole genome shotgun sequence (66693 bp)
Overview 1 RT 1: 7105-12567 bp Neighborhood of RT #1 [7105, 12575] groEL RVT_N RVT-GII GIIM HNHc DUF2188 DUF4156 Feature: gene Location: 7105-8748 bp Feature: domain Description: groEL Location: 7111-8734 bp Feature: domain Description: groEL Location: 71 1 1 -8734 bp Feature: gene Location: 9464-9693 bp Feature: gene Location: 9861-11519 bp Feature: RT Description: RVT_N Location: 9912-10155 bp Feature: RT Description: RVT_N Location: 991 2-1 01 55 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10200-10845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0200-1 0845 bp Feature: domain Description: GIIM Note: maturase Location: 10899-11130 bp Feature: domain Description: GIIM Note: maturase Location: 1 0899-1 1 1 30 bp Feature: domain Description: HNHc Note: nucleases Location: 11343-11502 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 343-1 1 502 bp Feature: gene Location: 11626-11850 bp Feature: domain Description: DUF2188 Location: 11644-11821 bp Feature: domain Description: DUF21 88 Location: 1 1 644-1 1 821 bp Feature: gene Location: 12222-12575 bp Feature: domain Description: DUF4156 Location: 12294-12567 bp Feature: domain Description: DUF41 56 Location: 1 2294-1 2567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2188 (pfam09954), DUF4156 (pfam13698), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NEYC01000037.1 Cronobacter sakazakii strain MOD1-comp53b csakComp53b_contig_37, whole genome shotgun sequence (100007 bp)
Overview 1 RT 1: 29634-36599 bp Neighborhood of RT #1 [29634, 36610] COG4643 COG5519 Ogr_Delta RVT-Retrons PRK09692 Feature: gene Location: 29634-32312 bp Feature: domain Description: COG4643 Location: 29643-30582 bp Feature: domain Description: COG4643 Location: 2 9643-30582 bp Feature: domain Description: COG5519 Location: 30684-32295 bp Feature: domain Description: COG5519 Location: 30684-32 2 95 bp Feature: gene Location: 32593-32865 bp Feature: domain Description: Ogr_Delta Location: 32614-32752 bp Feature: domain Description: Ogr_Delta Location: 32 614-32 752 bp Feature: gene Location: 33557-34744 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33701-34286 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33701-342 86 bp Feature: gene Location: 34734-35447 bp Feature: gene Location: 35444-36610 bp Feature: domain Description: PRK09692 Location: 35453-36599 bp Feature: domain Description: PRK09692 Location: 35453-36599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4643 (Uncharacterized domain associated with phage/plasmid primase ), COG5519 (Uncharcterized protein, DUF927 family ), Ogr_Delta (pfam04606), RVT-Retrons, PRK09692 (Integrase; provisional)