myRT

myRT report for GCA_002204205.1_ASM220420v1

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Seq: MYFJ01000055.1 Photorhabdus luminescens strain HIM3 NODE_9_length_191673_cov_18.5834_ID_17, whole genome shotgun sequence (191673 bp)
Overview 1 RT 1: 47700-51702 bp 2 RT 2: 64006-69907 bp Neighborhood of RT #1 [47700, 51722] HTH_29 HTH_33 COG3547 RVT-GII AAA_15 Neighborhood of RT #2 [64006, 69966] DDE_Tnp_1_3 RVT-UG12 PRK09010 DUF3577 Feature: gene Location: 47700-48128 bp Feature: domain Description: HTH_29 Location: 47784-47952 bp Feature: domain Description: HTH_29 Location: 47784-47952 bp Feature: domain Description: HTH_33 Location: 47985-48093 bp Feature: domain Description: HTH_33 Location: 47985-48093 bp Feature: gene Location: 48364-49368 bp Ori: OWO79759.1 Feature: domain Description: COG3547 Location: 48379-49336 bp Feature: domain Description: COG3547 Location: 48379-49336 bp Feature: gene Location: 49528-50862 bp Ori: OWO79845.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49813-50500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4981 3-50500 bp Feature: gene Location: 50933-51136 bp Feature: gene Location: 51354-51722 bp Feature: domain Description: AAA_15 Location: 51360-51702 bp Feature: domain Description: AAA_1 5 Location: 51 360-51 702 bp Feature: gene Location: 64006-65235 bp Feature: gene Location: 65465-65635 bp Ori: OWO79771.1 Feature: domain Description: DDE_Tnp_1_3 Location: 65513-65621 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 6551 3-65621 bp Feature: gene Location: 65831-67528 bp Ori: OWO79772.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 66167-66620 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 661 67-66620 bp Feature: gene Location: 68967-69431 bp Ori: OWO79773.1 Feature: domain Description: PRK09010 Location: 68970-69357 bp Feature: domain Description: PRK0901 0 Location: 68970-69357 bp Feature: gene Location: 69505-69966 bp Ori: OWO79774.1 Feature: domain Description: DUF3577 Location: 69523-69907 bp Feature: domain Description: DUF3577 Location: 69523-69907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), COG3547 (Transposase ), RVT-GII, AAA_15 (pfam13175), DDE_Tnp_1_3 (pfam13612), RVT-UG12, PRK09010 (single-stranded DNA-binding protein; Provisional), DUF3577 (pfam12101)

Seq: MYFJ01000063.1 Photorhabdus luminescens strain HIM3 NODE_17_length_113765_cov_19.3226_ID_33, whole genome shotgun sequence (113765 bp)
Overview 1 RT 1: 43618-52896 bp Neighborhood of RT #1 [43618, 53096] PRK11068 RVT-GII GIIM COG3547 DDE_Tnp_ISL3 PRiA4_ORF3 RVT-GII GIIM HTH_Tnp_1 Feature: gene Location: 43618-44109 bp Ori: OWO79040.1 Feature: domain Description: PRK11068 Location: 43621-44101 bp Feature: domain Description: PRK11068 Location: 4362 1-44101 bp Feature: gene Location: 44738-44939 bp Feature: gene Location: 45010-46303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45295-45982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 452 95-45982 bp Feature: domain Description: GIIM Note: maturase Location: 46048-46252 bp Feature: domain Description: GIIM Note: maturase Location: 46048-462 52 bp Feature: gene Location: 46535-47559 bp Feature: domain Description: COG3547 Location: 46559-47321 bp Feature: domain Description: COG3547 Location: 46559-4732 1 bp Feature: gene Location: 47855-49237 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 48572-48866 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 48572 -48866 bp Feature: gene Location: 49860-50507 bp Ori: OWO79041.1 Feature: domain Description: PRiA4_ORF3 Location: 49878-50364 bp Feature: domain Description: PRiA4_ORF3 Location: 49878-50364 bp Feature: gene Location: 50437-50772 bp Feature: gene Location: 50892-52301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51237-51855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512 37-51855 bp Feature: domain Description: GIIM Note: maturase Location: 51903-52122 bp Feature: domain Description: GIIM Note: maturase Location: 51903-52 12 2 bp Feature: gene Location: 52461-52785 bp Feature: gene Location: 52782-53096 bp Feature: domain Description: HTH_Tnp_1 Location: 52788-52896 bp Feature: domain Description: HTH_Tnp_1 Location: 52 788-52 896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11068 (phosphatidylglycerophosphatase A; Provisional), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), DDE_Tnp_ISL3 (pfam01610), PRiA4_ORF3 (pfam07929), HTH_Tnp_1 (pfam01527)

Seq: MYFJ01000044.1 Photorhabdus luminescens strain HIM3 NODE_23_length_70735_cov_20.7981_ID_45, whole genome shotgun sequence (70735 bp)
Overview 1 RT 1: 21619-29580 bp Neighborhood of RT #1 [21619, 29580] PRK09694 RVT-Retrons ABC_ATPase Feature: gene Location: 21619-24336 bp Ori: OWO80975.1 Feature: domain Description: PRK09694 Location: 21625-23989 bp Feature: domain Description: PRK09694 Location: 21625-23 989 bp Feature: gene Location: 24986-25240 bp Feature: gene Location: 25843-26805 bp Ori: OWO81014.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25966-26536 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25966-2653 6 bp Feature: gene Location: 26809-28149 bp Ori: OWO80977.1 Feature: domain Description: ABC_ATPase Location: 26866-27592 bp Feature: domain Description: ABC_ATPase Location: 26866-27592 bp Feature: gene Location: 28549-29580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09694 (CRISPR-associated helicase/endonuclease Cas3), RVT-Retrons, ABC_ATPase (pfam09818)