myRT

myRT report for GCA_002204455.1_ASM220445v1

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Seq: NHRU01000015.1 Porphyromonas gingivalis strain KCOM 2797 JS2_15, whole genome shotgun sequence (60253 bp)
Overview 1 RT 1: 27060-37039 bp Neighborhood of RT #1 [27060, 37039] gyrB GATase1_2 rDP_like RVT-UG8 RVT-UG3 Feature: gene Location: 27060-29024 bp Ori: OWP28205.1 Feature: domain Description: gyrB Location: 27087-29013 bp Feature: domain Description: gyrB Location: 27087-2901 3 bp Feature: gene Location: 29017-30825 bp Ori: OWP28206.1 Feature: domain Description: GATase1_2 Location: 29152-29812 bp Feature: domain Description: GATase1 _2 Location: 291 52-2981 2 bp Feature: domain Description: rDP_like Location: 29863-30790 bp Feature: domain Description: rDP_like Location: 29863-30790 bp Feature: gene Location: 32012-34201 bp Ori: OWP28207.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 32633-33086 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 32633-33086 bp Feature: gene Location: 34192-35655 bp Ori: OWP28208.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 34648-35179 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 34648-351 79 bp Feature: gene Location: 35752-36534 bp Feature: gene Location: 36524-37039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gyrB (TIGR01059), GATase1_2 (cd01745), rDP_like (cd01301), RVT-UG8, RVT-UG3

Seq: NHRU01000003.1 Porphyromonas gingivalis strain KCOM 2797 JS2_3, whole genome shotgun sequence (227006 bp)
Overview 1 RT 1: 49136-55190 bp Neighborhood of RT #1 [49136, 55249] cas_Cmr5 Cmr6_III-B CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III DUF1661 Feature: gene Location: 49136-49579 bp Ori: OWP32134.1 Feature: domain Description: cas_Cmr5 Location: 49175-49481 bp Feature: domain Description: cas_Cmr5 Location: 49175-49481 bp Feature: gene Location: 49576-50337 bp Ori: OWP32135.1 Feature: domain Description: Cmr6_III-B Location: 49651-50326 bp Feature: domain Description: Cmr6_III-B Location: 49651-5032 6 bp Feature: gene Location: 50398-53493 bp Ori: OWP32136.1 Feature: domain Description: CRISPR_Cas6 Location: 50932-51286 bp Feature: domain Description: CRISPR_Cas6 Location: 50932 -512 86 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 51436-52048 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 51436-52 048 bp Feature: domain Description: Cas1_I-II-III Location: 52498-53452 bp Feature: domain Description: Cas1_I-II-III Location: 52 498-53452 bp Feature: gene Location: 53513-53803 bp Ori: OWP32137.1 Feature: domain Description: Cas2_I_II_III Location: 53534-53753 bp Feature: domain Description: Cas2 _I_II_III Location: 53534-53753 bp Feature: gene Location: 55097-55249 bp Feature: domain Description: DUF1661 Location: 55100-55190 bp Feature: domain Description: DUF1661 Location: 55100-55190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cas_Cmr5 (TIGR01881), Cmr6_III-B (cd09661), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), DUF1661 (pfam07877)

Seq: NHRU01000001.1 Porphyromonas gingivalis strain KCOM 2797 JS2_1, whole genome shotgun sequence (452895 bp)
Overview 1 RT 1: 50942-53934 bp 2 RT 2: 212041-215121 bp Neighborhood of RT #1 [50942, 53996] DUF4134 RVT_N RVT-GII GIIM DUF4133 Neighborhood of RT #2 [212041, 215135] DUF4133 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 50942-51163 bp Ori: OWP34369.1 Feature: domain Description: DUF4134 Location: 50969-51149 bp Feature: domain Description: DUF413 4 Location: 50969-51149 bp Feature: gene Location: 51184-51476 bp Feature: gene Location: 51772-53439 bp Ori: OWP34370.1 Feature: domain Description: RVT_N Location: 51829-52072 bp Feature: domain Description: RVT_N Location: 51829-52072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52117-52765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52117-52765 bp Feature: domain Description: GIIM Note: maturase Location: 52822-53053 bp Feature: domain Description: GIIM Note: maturase Location: 52822-53 053 bp Feature: gene Location: 53390-53657 bp Feature: gene Location: 53661-53996 bp Ori: OWP34371.1 Feature: domain Description: DUF4133 Location: 53673-53934 bp Feature: domain Description: DUF413 3 Location: 53 673 -53 93 4 bp Feature: gene Location: 212041-212418 bp Ori: OWP34514.1 Feature: domain Description: DUF4133 Location: 212059-212329 bp Feature: domain Description: DUF413 3 Location: 212059-2123 29 bp Feature: gene Location: 212423-212690 bp Feature: gene Location: 212641-214308 bp Ori: OWP34515.1 Feature: domain Description: RVT_N Location: 212698-212941 bp Feature: domain Description: RVT_N Location: 212698-212941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 212986-213634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 212986-213 63 4 bp Feature: domain Description: GIIM Note: maturase Location: 213691-213922 bp Feature: domain Description: GIIM Note: maturase Location: 213 691-213 922 bp Feature: gene Location: 214604-214896 bp Feature: gene Location: 214917-215135 bp Ori: OWP34516.1 Feature: domain Description: DUF4134 Location: 214941-215121 bp Feature: domain Description: DUF413 4 Location: 214941-215121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)