myRT

myRT report for GCA_002205095.1_ASM220509v1

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Seq: NIZE01000049.1 Escherichia coli strain 4349 NODE_173_length_149576_cov_39.173424, whole genome shotgun sequence (149670 bp)
Overview 1 RT 1: 39012-45838 bp Neighborhood of RT #1 [39012, 45840] Prim_Zn_Ribbon COG3378 RVT-Retrons COG3943 PRK15011 Feature: gene Location: 39012-41345 bp Feature: domain Description: Prim_Zn_Ribbon Location: 39102-39210 bp Feature: domain Description: Prim_Zn_Ribbon Location: 391 02-3921 0 bp Feature: domain Description: COG3378 Location: 39822-41337 bp Feature: domain Description: COG3378 Location: 39822-41 337 bp Feature: gene Location: 41947-42897 bp Feature: gene Location: 42884-43834 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42983-43574 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42983-43574 bp Feature: gene Location: 44128-44274 bp Feature: domain Description: COG3943 Location: 44131-44230 bp Feature: domain Description: COG3943 Location: 441 31 -44230 bp Feature: gene Location: 44656-45840 bp Feature: domain Description: PRK15011 Location: 44665-45838 bp Feature: domain Description: PRK1 501 1 Location: 44665-45838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, COG3943 (Uncharacterized conserved protein ), PRK15011 (sugar efflux transporter SetB)

Seq: NIZE01000137.1 Escherichia coli strain 4349 NODE_337_length_30950_cov_39.828369, whole genome shotgun sequence (31044 bp)
Overview 1 RT 1: 164-3638 bp Neighborhood of RT #1 [164, 3655] Rep_3 Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII PRK10276 Feature: gene Location: 164-472 bp Feature: domain Description: Rep_3 Location: 170-434 bp Feature: domain Description: Rep_3 Location: 170-434 bp Feature: gene Location: 482-1179 bp Feature: domain Description: Zn_Tnp_IS1 Location: 488-590 bp Feature: domain Description: Zn_Tnp_IS1 Location: 488-590 bp Feature: domain Description: HTH_Tnp_IS1 Location: 611-743 bp Feature: domain Description: HTH_Tnp_IS1 Location: 611-743 bp Feature: gene Location: 1331-2815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1733-2423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1733-2 42 3 bp Feature: gene Location: 2815-3066 bp Feature: gene Location: 3224-3655 bp Feature: domain Description: PRK10276 Location: 3275-3638 bp Feature: domain Description: PRK102 76 Location: 32 75-3638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Rep_3 (pfam01051), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759)