myRT

myRT report for GCA_002205635.1_ASM220563v1

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Seq: NISJ01000011.1 Sphingopyxis witflariensis strain DSM 14551 NODE_11_length_145395_cov_46.7529, whole genome shotgun sequence (145395 bp)
Overview 1 RT 1: 110430-117554 bp Neighborhood of RT #1 [110430, 117700] AlpA COG5489 RVT-GII GIIM PRK09692 INT_C_like_1 Feature: gene Location: 110430-110651 bp Feature: domain Description: AlpA Location: 110439-110604 bp Feature: domain Description: AlpA Location: 1 1 0439-1 1 0604 bp Feature: gene Location: 110707-111030 bp Feature: domain Description: COG5489 Location: 110710-111028 bp Feature: domain Description: COG5489 Location: 1 1 071 0-1 1 1 028 bp Feature: gene Location: 111599-113167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111950-112670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 950-1 1 2670 bp Feature: domain Description: GIIM Note: maturase Location: 112742-112970 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 2742-1 1 2970 bp Feature: gene Location: 114143-115384 bp Feature: domain Description: PRK09692 Location: 114149-115358 bp Feature: domain Description: PRK09692 Location: 1 1 41 49-1 1 5358 bp Feature: gene Location: 115718-117700 bp Feature: domain Description: INT_C_like_1 Location: 117068-117554 bp Feature: domain Description: INT_C_like_1 Location: 1 1 7068-1 1 7554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlpA (COG3311), COG5489 (Uncharacterized conserved protein, DUF736 family ), RVT-GII, GIIM (pfam08388), PRK09692 (Integrase; provisional), INT_C_like_1 (cd01184)

Seq: NISJ01000021.1 Sphingopyxis witflariensis strain DSM 14551 NODE_21_length_21996_cov_35.8281, whole genome shotgun sequence (21996 bp)
Overview 1 RT 1: 15196-21376 bp Neighborhood of RT #1 [15196, 21405] AlbA_2 ParB_N_like RVT-Retrons Hypoth_Ymh Feature: gene Location: 15196-16140 bp Feature: domain Description: AlbA_2 Location: 15268-15649 bp Feature: domain Description: AlbA_2 Location: 152 68-15649 bp Feature: gene Location: 16552-18627 bp Feature: domain Description: ParB_N_like Location: 16669-16918 bp Feature: domain Description: ParB_N_like Location: 16669-16918 bp Feature: gene Location: 18956-20692 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19091-19721 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19091-1972 1 bp Feature: gene Location: 20698-21405 bp Feature: domain Description: Hypoth_Ymh Location: 21016-21376 bp Feature: domain Description: Hypoth_Ymh Location: 2 1016-2 1376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlbA_2 (pfam04326), ParB_N_like (cd16411), RVT-Retrons, Hypoth_Ymh (pfam09509)