myRT

myRT report for GCA_002206085.1_SJD4

Download annotations/find similar RTs

Seq: KZ248255.1 Porphyromonas gingivalis SJD4 genomic scaffold scaffold14, whole genome shotgun sequence (36304 bp)
Overview 1 RT 1: 2355-9062 bp Neighborhood of RT #1 [2355, 9298] OMP_b-brl CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III Cmr6_III-B cas_Cmr5 Feature: gene Location: 2355-2969 bp Ori: OWR80202.1 Feature: domain Description: OMP_b-brl Location: 2415-2940 bp Feature: domain Description: OMP_b-brl Location: 241 5-2940 bp Feature: gene Location: 2966-3211 bp Feature: gene Location: 4947-8042 bp Ori: OWR80204.1 Feature: domain Description: CRISPR_Cas6 Location: 5481-5835 bp Feature: domain Description: CRISPR_Cas6 Location: 5481 -5835 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5985-6597 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5985-6597 bp Feature: domain Description: Cas1_I-II-III Location: 7047-8001 bp Feature: domain Description: Cas1 _I-II-III Location: 7047-8001 bp Feature: gene Location: 8103-8864 bp Ori: OWR80205.1 Feature: domain Description: Cmr6_III-B Location: 8178-8853 bp Feature: domain Description: Cmr6_III-B Location: 81 78-8853 bp Feature: gene Location: 8861-9298 bp Ori: OWR80206.1 Feature: domain Description: cas_Cmr5 Location: 8900-9062 bp Feature: domain Description: cas_Cmr5 Location: 8900-9062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_b-brl (pfam13505), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), cas_Cmr5 (TIGR01881)

Seq: KZ248256.1 Porphyromonas gingivalis SJD4 genomic scaffold scaffold15, whole genome shotgun sequence (36086 bp)
Overview 1 RT 1: 7024-14810 bp Neighborhood of RT #1 [7024, 14810] GATase1_2 rDP_like RVT-UG8 RVT-UG3 Feature: gene Location: 7024-8832 bp Ori: OWR80085.1 Feature: domain Description: GATase1_2 Location: 7159-7819 bp Feature: domain Description: GATase1_2 Location: 7159-7819 bp Feature: domain Description: rDP_like Location: 7870-8797 bp Feature: domain Description: rDP_like Location: 7870-8797 bp Feature: gene Location: 9506-9721 bp Feature: gene Location: 9774-11957 bp Ori: OWR80087.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 10389-10842 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 10389-10842 bp Feature: gene Location: 11954-13426 bp Ori: OWR80088.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 12410-12950 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 12 410-12 950 bp Feature: gene Location: 13523-14305 bp Feature: gene Location: 14295-14810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GATase1_2 (cd01745), rDP_like (cd01301), RVT-UG8, RVT-UG3

Seq: KZ248366.1 Porphyromonas gingivalis SJD4 genomic scaffold scaffold125, whole genome shotgun sequence (2413 bp)
Overview 1 RT 1: 117-1398 bp Neighborhood of RT #1 [117, 1784] RVT_N RVT-GII GIIM Feature: gene Location: 117-1784 bp Ori: OWR80358.1 Feature: domain Description: RVT_N Location: 174-417 bp Feature: domain Description: RVT_N Location: 174-417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462-1110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462-1110 bp Feature: domain Description: GIIM Note: maturase Location: 1167-1398 bp Feature: domain Description: GIIM Note: maturase Location: 1167-13 98 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: KZ248337.1 Porphyromonas gingivalis SJD4 genomic scaffold scaffold96, whole genome shotgun sequence (6123 bp)
Overview 1 RT 1: 2693-5866 bp Neighborhood of RT #1 [2693, 5866] bPH_2 RVT-GII GIIM Feature: gene Location: 2693-3208 bp Feature: gene Location: 3303-3764 bp Ori: OWR75589.1 Feature: domain Description: bPH_2 Location: 3513-3684 bp Feature: domain Description: bPH_2 Location: 3513-3684 bp Feature: gene Location: 3897-5291 bp Ori: OWR75590.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4227-4845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 227-4 84 5 bp Feature: domain Description: GIIM Note: maturase Location: 4899-5127 bp Feature: domain Description: GIIM Note: maturase Location: 4 899-5127 bp Feature: gene Location: 5777-5866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bPH_2 (pfam03703), RVT-GII, GIIM (pfam08388)