myRT

myRT report for GCA_002206105.1_SJD11

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Seq: KZ248499.1 Porphyromonas gingivalis SJD11 genomic scaffold scaffold111, whole genome shotgun sequence (2414 bp)
Overview 1 RT 1: 630-1911 bp Neighborhood of RT #1 [630, 2297] RVT_N RVT-GII GIIM Feature: gene Location: 630-2297 bp Ori: OWR80691.1 Feature: domain Description: RVT_N Location: 687-930 bp Feature: domain Description: RVT_N Location: 687-930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975-1623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975-1 623 bp Feature: domain Description: GIIM Note: maturase Location: 1680-1911 bp Feature: domain Description: GIIM Note: maturase Location: 1 680-1 91 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: KZ248406.1 Porphyromonas gingivalis SJD11 genomic scaffold scaffold18, whole genome shotgun sequence (38268 bp)
Overview 1 RT 1: 6751-10861 bp Neighborhood of RT #1 [6751, 11085] CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III Cmr6_III-B cas_Cmr5 Feature: gene Location: 6751-9846 bp Ori: OWR79866.1 Feature: domain Description: CRISPR_Cas6 Location: 7285-7639 bp Feature: domain Description: CRISPR_Cas6 Location: 72 85-7639 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7789-8401 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7789-8401 bp Feature: domain Description: Cas1_I-II-III Location: 8851-9808 bp Feature: domain Description: Cas1_I-II-III Location: 8851-9808 bp Feature: gene Location: 9908-10648 bp Ori: OWR79867.1 Feature: domain Description: Cmr6_III-B Location: 9983-10637 bp Feature: domain Description: Cmr6_III-B Location: 9983-10637 bp Feature: gene Location: 10645-11085 bp Ori: OWR79868.1 Feature: domain Description: cas_Cmr5 Location: 10684-10861 bp Feature: domain Description: cas_Cmr5 Location: 10684-10861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), cas_Cmr5 (TIGR01881)