myRT

myRT report for GCA_002206235.2_ASM220623v2

Download annotations/find similar RTs

Seq: NJFI02000001.1 Enterococcus faecium strain FDAARGOS_332 unitig_10_quiver_trim_quiver_pilon, whole genome shotgun sequence (54534 bp)
Overview 1 RT 1: 12575-16972 bp Neighborhood of RT #1 [12575, 17664] MazE RVT-GII HNHc VirB4 Feature: gene Location: 12575-12838 bp Ori: PNL25100.1 Feature: domain Description: MazE Location: 12596-12833 bp Feature: domain Description: MazE Location: 1 2596-1 2833 bp Feature: gene Location: 12897-13274 bp Feature: gene Location: 13405-15282 bp Ori: PNL25101.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13720-14458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3720-1 4458 bp Feature: domain Description: HNHc Note: nucleases Location: 15016-15169 bp Feature: domain Description: HNHc Note: nucleases Location: 1 501 6-1 51 69 bp Feature: gene Location: 15469-15702 bp Feature: gene Location: 15970-17664 bp Ori: PNL25103.1 Feature: domain Description: VirB4 Location: 16288-16972 bp Feature: domain Description: VirB4 Location: 1 6288-1 6972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MazE (COG2336), RVT-GII, HNHc (smart00507), VirB4 (COG3451)

Seq: NJFI02000005.1 Enterococcus faecium strain FDAARGOS_332 unitig_0_quiver_trim_quiver_pilon, whole genome shotgun sequence (2922694 bp)
Overview 1 RT 1: 465326-470129 bp 2 RT 2: 2473152-2477936 bp Neighborhood of RT #1 [465326, 470143] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Neighborhood of RT #2 [2473152, 2477956] Zeta_toxin RVT-GII HNHc FtsK Feature: gene Location: 465326-466510 bp Ori: PNL22378.1 Feature: domain Description: HTH_XRE Location: 465356-465500 bp Feature: domain Description: HTH_XRE Location: 465356-465500 bp Feature: domain Description: Rol_Rep_N Location: 465533-465797 bp Feature: domain Description: Rol_Rep_N Location: 465533-465797 bp Feature: domain Description: Rep_trans Location: 465821-466433 bp Feature: domain Description: Rep_trans Location: 46582 1-466433 bp Feature: gene Location: 466507-466643 bp Feature: gene Location: 467389-469299 bp Ori: PNL22379.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 467722-468460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46772 2 -468460 bp Feature: domain Description: HNHc Note: nucleases Location: 469015-469180 bp Feature: domain Description: HNHc Note: nucleases Location: 469015-469180 bp Feature: gene Location: 469403-469627 bp Feature: gene Location: 469640-470143 bp Ori: PNL22381.1 Feature: domain Description: ArdA Location: 469658-470129 bp Feature: domain Description: ArdA Location: 469658-47012 9 bp Feature: gene Location: 2473152-2473826 bp Ori: PNL24230.1 Feature: domain Description: Zeta_toxin Location: 2473251-2473734 bp Feature: domain Description: Zeta_toxin Location: 2 4732 51-2 473734 bp Feature: gene Location: 2473904-2474143 bp Feature: gene Location: 2474237-2476096 bp Ori: PNL24232.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2474546-2475287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 474546-2 4752 87 bp Feature: domain Description: HNHc Note: nucleases Location: 2475842-2475980 bp Feature: domain Description: HNHc Note: nucleases Location: 2 475842 -2 475980 bp Feature: gene Location: 2476215-2476445 bp Feature: gene Location: 2476811-2477956 bp Ori: PNL24234.1 Feature: domain Description: FtsK Location: 2477471-2477936 bp Feature: domain Description: FtsK Location: 2 477471-2 477936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275), Zeta_toxin (pfam06414), FtsK (COG1674)

Seq: NJFI02000002.1 Enterococcus faecium strain FDAARGOS_332 unitig_4_quiver_trim_quiver_pilon, whole genome shotgun sequence (38380 bp)
Overview 1 RT 1: 25492-31624 bp Neighborhood of RT #1 [25492, 31629] Rve HsdM RVT-AbiP2 Tra8 PinE Feature: gene Location: 25492-26178 bp Ori: PNL25073.1 Feature: domain Description: Rve Location: 25501-26149 bp Feature: domain Description: Rve Location: 25501-26149 bp Feature: gene Location: 26234-27679 bp Feature: domain Description: HsdM Location: 26255-27680 bp Feature: domain Description: HsdM Location: 26255-27680 bp Feature: gene Location: 28017-29492 bp Ori: PNL25074.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 28365-28830 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 283 65-2883 0 bp Feature: gene Location: 29470-30423 bp Ori: PNL25075.1 Feature: domain Description: Tra8 Location: 29473-30400 bp Feature: domain Description: Tra8 Location: 29473 -3 0400 bp Feature: gene Location: 31066-31629 bp Ori: PNL25076.1 Feature: domain Description: PinE Location: 31078-31624 bp Feature: domain Description: PinE Location: 3 1078-3 1624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826), PinE (COG1961)

Seq: NJFI02000003.1 Enterococcus faecium strain FDAARGOS_332 unitig_2_quiver_trim_quiver_pilon, whole genome shotgun sequence (206207 bp)
Overview 1 RT 1: 12461-17740 bp Neighborhood of RT #1 [12461, 18432] Glucosaminidase RVT-GII HNHc VirB4 Feature: gene Location: 12461-13665 bp Feature: domain Description: Glucosaminidase Location: 12737-12869 bp Feature: domain Description: Glucosaminidase Location: 12737-12869 bp Feature: gene Location: 13665-14042 bp Feature: gene Location: 14173-16050 bp Ori: PNL24765.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14488-15226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 4 88-15226 bp Feature: domain Description: HNHc Note: nucleases Location: 15784-15937 bp Feature: domain Description: HNHc Note: nucleases Location: 15784 -15937 bp Feature: gene Location: 16237-16470 bp Feature: gene Location: 16738-18432 bp Ori: PNL24767.1 Feature: domain Description: VirB4 Location: 17056-17740 bp Feature: domain Description: VirB4 Location: 17056-1774 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glucosaminidase (pfam01832), RVT-GII, HNHc (smart00507), VirB4 (COG3451)

Seq: NJFI02000006.1 Enterococcus faecium strain FDAARGOS_332 unitig_9_quiver_quiver_pilon, whole genome shotgun sequence (20287 bp)
Overview 1 RT 1: 4272-10209 bp Neighborhood of RT #1 [4272, 10209] RVT-GII Feature: gene Location: 4272-5478 bp Feature: gene Location: 5478-5850 bp Feature: gene Location: 6008-7845 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6320-6509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6320-65 09 bp Feature: gene Location: 8032-8263 bp Feature: gene Location: 8536-10209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII