myRT

myRT report for GCA_002206285.2_ASM220628v2

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Seq: NJFL02000001.1 Pseudomonas aeruginosa strain FDAARGOS_340 unitig_0_quiver_pilon, whole genome shotgun sequence (6680139 bp)
Overview 1 RT 1: 3184945-3193133 bp 2 RT 2: 3209397-3219694 bp Neighborhood of RT #1 [3184945, 3193141] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [3209397, 3219705] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 3184945-3185961 bp Feature: domain Description: COG3178 Location: 3184948-3185947 bp Feature: domain Description: COG31 78 Location: 31 84948-31 85947 bp Feature: gene Location: 3186834-3187046 bp Feature: gene Location: 3187234-3188946 bp Feature: RT Description: RVT_N Location: 3187291-3187534 bp Feature: RT Description: RVT_N Location: 31 87291 -31 87534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3187579-3188215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 87579-31 8821 5 bp Feature: domain Description: YkfC Location: 3188422-3188575 bp Feature: domain Description: YkfC Location: 31 88422-31 88575 bp Feature: domain Description: HNH Note: nucleases Location: 3188752-3188890 bp Feature: domain Description: HNH Note: nucleases Location: 31 88752-31 88890 bp Feature: gene Location: 3189079-3191868 bp Feature: domain Description: LptD Location: 3189274-3191854 bp Feature: domain Description: LptD Location: 31 89274-31 91 854 bp Feature: gene Location: 3191849-3193141 bp Feature: domain Description: PRK10770 Location: 3191939-3193133 bp Feature: domain Description: PRK1 0770 Location: 31 91 939-31 931 33 bp Feature: gene Location: 3209397-3211250 bp Feature: domain Description: PRK05658 Location: 3209409-3211248 bp Feature: domain Description: PRK05658 Location: 3209409-321 1 248 bp Feature: gene Location: 3211357-3215094 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 3211465-3212122 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 321 1 465-321 21 22 bp Feature: domain Description: PRK09776 Location: 3212335-3212806 bp Feature: domain Description: PRK09776 Location: 321 2335-321 2806 bp Feature: domain Description: PAS Location: 3212863-3213388 bp Feature: domain Description: PAS Location: 321 2863-321 3388 bp Feature: domain Description: PRK10060 Location: 3213397-3215044 bp Feature: domain Description: PRK1 0060 Location: 321 3397-321 5044 bp Feature: gene Location: 3216175-3217860 bp Feature: RT Description: RVT_N Location: 3216232-3216472 bp Feature: RT Description: RVT_N Location: 321 6232-321 6472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3216520-3217156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 6520-321 71 56 bp Feature: domain Description: GIIM Note: maturase Location: 3217210-3217441 bp Feature: domain Description: GIIM Note: maturase Location: 321 721 0-321 7441 bp Feature: domain Description: HNH Note: nucleases Location: 3217693-3217831 bp Feature: domain Description: HNH Note: nucleases Location: 321 7693-321 7831 bp Feature: gene Location: 3218188-3218325 bp Feature: gene Location: 3218584-3219705 bp Feature: domain Description: COG3177 Location: 3218602-3219694 bp Feature: domain Description: COG31 77 Location: 321 8602-321 9694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )